Showing 806 open source projects for "processing"

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  • 1
    sigTOOL
    sigTOOL provides a user-extendable signal analysis environment for processing electrophysiological data within MATLAB. Neuron spike-train, + spectral and time-domain analyses are built in. See http://dx.doi.org/10.1016/j.jneumeth.2008.11.004
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  • 2
    Swift Sequence Alignment Program

    Swift Sequence Alignment Program

    GPU-based DNA sequence alignment program using Smith-Waterman

    Swift is a DNA sequence alignment program that produces gapped alignment using the Smith-Waterman algorithm. It takes in a query file (FASTA format) and a reference file (FASTA format) as input. It outputs the reference name, read name, gapped alignment, alignment score, alignment start and end positions, and alignment length. I gave a talk on Swift in the GPU Technology Conference 2012. The talk can be accessed at...
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  • 3
    Vector,quaternion,matrix math library

    Vector,quaternion,matrix math library

    Free vector,quaternion,matrix math library

    ...For each headline there is a one line comment in Russian. Matrix are presented in OpenGL form 0 4 8 12 1 5 9 13 2 6 10 14 3 7 11 15 Now we are working on adding 50+ more functions for processing the planes, splines, bezier curves and interpolation methods.
    Downloads: 1 This Week
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  • 4
    Prediction of MHC class I- and MHC class II-restricted T-cell epitopes. Prediction of proteasomal/immunoproteasomal processing of antigens. Prediction of peptide-TAP binding.
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  • 5
    Math Transformations Library
    A library analog to those included in Matlab without the need of external libraries; just right for embedded or static linking. MTL was used to build a 3d Scanner. MTL consists of pars B - Basic Functions, Matrices, Images, Hypermodels (3d Models and up) N - Numeric Functions ranging from linear regression over nonlinear optimization to singular-value computation I - Image filters and Image enhancement H - Hardware related (optional part), does require additional libraries and is only...
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  • 6

    Simuquant

    A quantum circuit simulator written in Scala

    Simuquant is made to construct and simulate universal quantum circuits. It's GUI enables intuitive access and direct graphical feedback, making it useful in a classroom situation and the like. Simulation processing is done in parallel, utilizing parallel collections introduced in scala 2.9. This application has been created as part a bachelor-thesis at the Hamburg University of Applied Sciences. The thesis is available at: http://opus.haw-hamburg.de/volltexte/2012/1843/pdf/ba_dahl.pdf Future plans: - Operator grouping (enables repeated blocks) - Editable library
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  • 7
    N-Sense

    N-Sense

    N-Sense Sensory substitution software

    ...N-sense uses hearing as it's input port and is(will be) capable to allow multiple senses trough it as vision, magnetic orientation, humidity, velocity,time, altitude... Almost any data from computer can be made into sense and included into project. N-Sense is modular by design, written mostly in c++ to allow optimal processing speed and uses OpenCv for Image/video processing. Target platforms are Linux, Android, Windows, Mac(starting from first). Project is not ready for public use yet. READ wiki before starting use software to avoid problems! NOTE: software causes brains to learn and change in long run and there is risk of many side effects like: headache, dizziness, increased intelligence, changes in music taste, change in perception of reality. ...
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  • 8
    Redundancy due to cut-paste operations in text creates bias in machine learning for NLP. This module takes a directory and produces a subset of the files in that directory (in a list) with an upper bound on similarity between two files.
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  • 9
    Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format. A CGI-based web interface is also available. Please cite: Lee, W., Chen S.L. BioTechniques 33:1334-1341 (Dec 20
    Downloads: 1 This Week
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  • 10
    CallSim

    CallSim

    low-volume read processing base corrector

    CallSim is a software application that provides evidence for the validity of base calls believed to be sequencing errors and it is applicable to Ion Torrent and 454 data. CallSim provides a final classification or rescue of a base/indel in reads, where putative variants have been identified via typical SNP/indel workflows. plots rendered by: JFreeChart library http://sourceforge.net/projects/jfreechart/
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  • 11

    QUASR

    Cross-platform NGS processing and analysis pipeline in Python

    QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is...
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  • 12

    LabMonkey Embedded Automation Platform

    Create networks of embedded devices for data logging/automation tasks.

    LabMonkey is a collection of designs for embedded devices which can be networked together to provide a range of automation, data logging and signal processing functions. A key design objective is to use as little dedicated hardware as possible for communication between nodes in the network, and to be able to adapt the network topology in real-time so as to minimize the occurrence of collisions between packets. To achieve this, a protocol has been designed specifically for the task, and implemented in assembler for AVR microcontrollers. ...
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  • 13
    FluxY

    FluxY

    FluxY – a processing tool set for stable isotope label MS data

    FluxY is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data used for metabolic flux analysis. To get started simply download and unzip the FluxY.zip file and follow the getting started document in the Instructions folder.
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  • 14
    OmniHelp is a cross-platform, browser-independent, tri-pane help viewer built in pure JavaScript and CSS with HTML 4. Some functions (such as help embedding) may in the future be in Java, C, or C++; CSH is fully supported. All code is under the LGPL.
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  • 15
    FAZIA DAQ

    FAZIA DAQ

    The aim of FAZIA project is to build a 4Pi array for charged particles

    ...The aim of the project is to build a 4Pi array for charged particles, with high granularity and good energy resolution, with A and Z identification capability over the widest possible range. It will use the up-to-date techniques concerning detection, signal processing and data flow, with full digital electronics. Neutron detection is also foreseen via the collaboration with the NEUTROMANIA group. FAZIA is designed to operate at stable and radioactive beams facilities like LNL-Legnaro, LNS-Catania in Italy, GANIL-SPIRAL and SPIRAL2 in France, GSI-FAIR in Germany in the horizon 2010-2015. The availability of the european radioactive beam facility EURISOL expected in the period 2015-2020 will also be a major opportunity for the FAZIA community.
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  • 16
    PTools is a set of useful tools written in Pascal. It includes: scientific calculator, archiver, text editor, remote adminitration and more. It is designed to be portable across operating systems, specially Java-based mobiles, Windows and Unixes.
    Downloads: 10 This Week
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  • 17

    PHN/LAB file format converter

    Convert the format of speech label files

    Research in speech processing requires labeling and segmentation of speech signals, i.e., label files. Two useful formats for label files are the CSLU format (.phn extension) and the HTK format (.lab extension). This program converts speech label files from any of these two formats to the other one. Do this: 1- Provide the source directory (directory where the original label files are). 2- Provide the destination directory (directory where the new label files will be placed). 3- Select the operation, either phn->lab or lab->phn. 4- Press the Process! ...
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  • 18
    A MATLAB package for wavelet analysis of circadian rhythms with both discrete (Daubechies) and continuous (Morlet) wavelets, as well as tools for batch processing of multiple time series, all accessible through a graphical user interface.
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  • 19
    CRFSharp

    CRFSharp

    CRFSharp is a .NET(C#) implementation of Conditional Random Field

    CRFSharp(aka CRF#) is a .NET(C#) implementation of Conditional Random Fields, an machine learning algorithm for learning from labeled sequences of examples. It is widely used in Natural Language Process (NLP) tasks, for example: word breaker, postagging, named entity recognized, query chunking and so on. CRF#'s mainly algorithm is the same as CRF++ written by Taku Kudo. It encodes model parameters by L-BFGS. Moreover, it has many significant improvement than CRF++, such as totally...
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  • 20
    BOR3D

    BOR3D

    BOR3D is an object recognition software framework for 3D data.

    This is the Boilerplate Object Recognition software framework for 3D data. We are focussing on combining processing steps for 3D data that are provided by 3rd party libraries like the PCL. Our goal is to present ready to use use case implementations. We hope that the community will share implementations using the framework defined by BOR3D.
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  • 21

    jaf_Utils

    A C++ library for Statistical Language Processing tasks.

    A C++ library for Statistical Language Processing tasks.
    Downloads: 1 This Week
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  • 22
    Advanced Speech Signal Analysis library provides a structure to handle various file formats and a variety of analysis functions commonly used in speech processing.
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  • 23
    The software is related to the PhD thesis of Zoltán Farkas, used to simulate work distribution and processing in hierarchical desktop grid systems.
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  • 24
    ViAmI-Server

    ViAmI-Server

    Pattern recognition for ADL events

    This software uses computer vision algorithms for mining sequence data from telemonitoring data with CBRs. We propose an approach which treats the detection of changes in behavior detected with a sensor/video fusion, which occur at radically different time-scales, through a CBR in two levels: low and high level. The system is always updating the database with the daily data.
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  • 25
    SemaRule Navigator
    SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.
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