Search Results for "processing" - Page 16
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Showing 806 open source projects for "processing"
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A Perl module and selection of scripts to aid processing of NEXUS-based tree files ready for supertree construction in programs like PAUP*.
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LinqYedict
Translate Chinese to English
Translate Chinese to English using CEDICT (cantonese dictionary). Demonstrate the speed of C# and Linq. Copy the chinese text from any browser/application to Windows clipboard and see the translation. -
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PolyCTLDesigner
Python scripts for designing polyepitope T-cell immunogens
Given the peptides (T-cell epitopes) PolyCTLDesigner selects flanking sequences to optimize TAP-binding and joins resulting oligopeptides into a polyepitope in a way providing efficient liberation of potential epitopes by proteasomal and/or immunoproteasomal processing and minimizing the number of junctional epitopes. For constructing polyepitopes PolyCTLDesigner utilizes known amino acid patterns of proteasome cleavage and TAP-binding specificity. PolyCTLDesigner is also able to choose antigenic peptides covering selected HLA repertoire with desired redundancy rate. Given the antigen sequences PolyCTLDesigner is also able to select T-helper epitopes. ... -
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LAVA for AFM
Lloyd's Algorithm-based Volumetric Analysis for AFM Images
This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image. Although developed for determining feature volume, LAVA is also completely compatible with other types of... -
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CDSbank
multi-sequence extraction, filtering & formatting
...CDSbank also stores Genbank feature annotation, a flag to indicate incomplete 5’ and 3’ ends, full taxonomic data, and a heuristic to rank the scientific interest of a species. This rich information allows fully automated data set preparation with a level of sophistication that meets or exceeds manual processing. Defaults ensure ease of use for typical scenarios while allowing great flexibility when needed. Access is via a free web service at http://hazeslab.med.ualberta.ca/CDSbank/. SourceForge code can be used to build a local installation. -
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fit2dcorr
SAXS 2D > 1D data reduction software, wrapper for Fit2D
...Please use the repository at https://github.com/Niels-Bohr-Institute-XNS-StructBiophys/fit2dcorr for the new updated versions. The old version is kept at sourceforge. Keywords: fit2d SAXS azimuthal averaging batch processing absolute units (exposure time, transmission, sample thickness) error bars C++ Unix OpenMP -
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Malimpa stands for MAtlab Library for IMage Processing and Analysis. It provides functions for 2D/3D grascale/color image creation, filtering, or measurement. It requires, and complements Matlab Image Processing Toolbox. Important notice: the project is now hosted in GitHub, https://github.com/dlegland/matImage
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QVision: Computer Vision Library for Qt
Computer vision and image processing library for Qt.
This library contains among other things a set of graphical widgets for video output, performance evaluation and augmented reality. The library also provides classes for several data types usually required by computer vision and image processing applications such as vectors, matrices, quaternions and images. Thanks to a large number of wrapper functions these objects can be used with highly efficient functionality from third party libraries such as OpenCV, GNU Scientific Library, Computational Geometry Algorithms Library, Intel's Math Kernel Library and Integrated Performance Primitives, the Octave library, etc... -
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iBRAIN2 Workflow Manager
A system for automated analysis and data handling for RNAi screens
The iBRAIN2 software system for RNAi high-content screening integrates automated analysis and customizable data management. It enables robust and complex parallel processing on computer cluster infrastructure and allows for reliable storage of primary and resulting data sets. -
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IDL specified API for manipulating and processing CellML 1.0 and 1.1. Includes C++ implementation. Accessible from a C++ program, or from any language for which a CORBA language mapping is available Also, a Java wrapper of the API is available.
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Hermes Natural Language Processing
A repository of software, documentation and data for NLP
Hermes is a repository of software, documentation and data for NLP. I am currently adding corpora extracted from Wikipedia (mostrly in Romance languages). -
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MDSTk is a collection of 2D/3D image processing tools aimed at medical images. It contains routines for volume data processing (3D filtering, segmentation, etc.) as well as fast low-level vector graphics library for surface and tetrahedral meshing. MDSTk has been forked by 3Dim Laboratory s.r.o. to provide better support and further push its development forward. Please check VPL (Voxel Processing Library) project available on Bitbucket (https://bitbucket.org/3dimlab/vpl).
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latexdiff is a Perl script, which compares two latex files and marks up significant differences between them (i.e. a diff for latex files). Various options are available for visual markup using standard latex packages such as "color.sty".
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...OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. It includes tools for meshing, notably snappyHexMesh, a parallelised mesher for complex CAD geometries, and for pre- and post-processing. Almost everything (including meshing, and pre- and post-processing) runs in parallel as standard, enabling users to take full advantage of computer hardware at their disposal. It was built with MinGW C++ in linux environment and using Symscape patch build brocess.
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CalcPi
This is a multiplatform program to calculate pi.
This program calculates pi and other mathematical constants to arbitrary precision, only limited by processing power and memory. Its main feature is not speed, but multiplatform capability and a nice GUI. -
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The Enterprise Science Processing Architecture is a modular science processing system that encourages code reuse. It is based on the Chain of Responsibility and strives to remain simple and sparse to support the widest possible community of users.
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OMR Reader
OMR Sheets Data Retrieval Software
...Do this for all the option groups on the form. Now save the info of these groups in a .omr file. For different forms, you can have different .omr files. These files can later be used for batch processing the scanned images of OMR sheets. Please rate... -
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LuaCV
OpenCV library wrapper for Lua language
LuaCV is OpenCV library wrapper for Lua language. Main goal is to access fast image processing library to light-weight, non-type language. Thanks to CMake project is a much easier to compile it under many OS platforms which are supported by OpenCV. LuaCV is being developed at faculty of Electrical Engineering and Communication of Brno University of Technology in Czech republic. Working with: Lua 5.2, OpenCV 2.2-2.4 LuaCV-0.2.0 (svn rev. 62) is last version compatible with Lua 5.1 but working only with OpenCV 2.2 and below. -
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Visage is a human computer interface that aims to replace the traditional mouse with the face. Using a webcam and Visage the movement of the face becomes the movement of the mouse pointer. Left/right Eye blinks fire left/right mouse click events.
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fem2d
2D Finite Element Method Tools
Collection of programs developed to perform various engineering analyses on structures using the finite element technique. -
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ASTL Automata Standard Template Library (Vincent Le Maout - Dominique Revuz) is a set of generic and efficient C++ components for automata manipulation.
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fluids-sh
acquire fluid properties from the NIST Chemistry WebBook
fluid.sh is a shell script which utilized wget to acquire fluid properties from the NIST Chemistry WebBook in a format suitable for further processing with shell scripts or e.g. xmgrace. It supports the full functionality provided by the website! The script takes the same input as command line arguments you need to enter on the web forms. It produces a ASCII text file containing the respective data points in columns headed by a well readable description. The advantage is that you do not need to "click" through three web pages and export the result - you can do it with one command in the shell! ...
