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User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files
Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.
CherBot is an information bot for Crossfire, Daimonin and good old plain IRC that keeps track of which players collect which items, who's been online, determines a level ranking, provides a mail system for mailing offline players, manages clans and
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Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
A platform which hosts battles between Fruit War robots - special java programs. The platform accepts source code as robot, and ranks all robots according to battle result. This project has been totally refined and is now hosted at http://robotypo.appspot.com
The goal of this project is to make a biologic pathway simulation / emulation application. The ultimate goal is to feed different file types to the application and configure a pathway and its behaviour.
The GIS Metadata Manager is a simple Java-based desktop application to manage files from geographic information systems (GIS) in a specified directory by grouping files into records, adding metadata and searching the metadata to find files.
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Java based utility which graphically displays NS1 NetStumbler Files. Allows importing of a background image/map. Quickly displays the contents of the NS1 file, displays strength/noise/SNR and allows access point selection.
A real-time graph plotter. While your application is computing and logging results to a CSV file using the LiveGraph Writer API, the plotter lets you visualise and monitor the results live - by instantly plotting charts and graphs of the data.
The Open Optimization for Java provides a framework and the implementation of commonly-used algorithms found in Graph Theory and Network Optimization, e.g. shortest path and postman problem.
WOOKI is a peer-to-peer wiki. It based on unstructured p2P network with data replication. WOOT framework synchronizes data. SWOOKI is a semantic extenion of WOOKI. It is implemented as a plugin of WOOKI. SWOOKI is peer-to-peer semantic wiki.
The goal of the GeneText project is the development of a software package that will enable users to dynamically generate an information summary page from multiple sources given a search term. Fields of interest are biology, genetics and bioinformatics.
KNeTS (Knowledge Elicitation Tools) is a survey tool to create multi-agent models based on local knowledge using pattern analysis to identify rules that are iteratively validated with the informant. The final output is a knowledge-based multi-agent model
The LogMeFree is a tool to transform NMEA frames to Google's KML.
The data can be read from a file or directly from a GPS device (i.e. GPS logger, mouse).
OptorSim is a Grid simulator designed to test dynamic replication strategies used in optimising data location within a Grid. Each simulated site contains several storage or computing elements. Simulated jobs run and file accesses may trigger replication.
XML is one way to transfer a Printed Circuit Board (PCB) data base
between Software Applications. This projects starts with an export
from PCB123 and creates a Kicad brd file.
yades - "yet another differential equation solver". This Java application solves ordinary differential equations (ODE) numerically and displays the results as tables, graphs, direction fields or vector fields.
Aricom is a file compressor. It is based on arithmetic coding compression. Just a proof of concept of the implementation of a statistical compressor. Aimple Java GUI interface provided. Best efficiency than huffman compressor. Entropy and information
Large set of functions for biological records (ECG, EEG, phono), datastore, datamining and analysis (HRV, QT, RR, ST). The application is written in Java, so that it is assumed to work on all devices. It runs as a desktop or client-server application. It
BioStream enables bioinformatics researchers to create, query and apply tools to their own databases. It supports sequence files and other data types by allowing the creation of metadata definition files.