Showing 525 open source projects for "multi-threaded"

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  • Build Agents and Models on One Platform Icon
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  • 1

    Hierachical_DNAcoder

    An Hierachical Approach to Multi-Reference Genome compression

    The storage and data transferring of large genome data are becoming important concerns for biomedical researchers. We present a novel multi-reference based genome compression method with a hierachical structure. Our approach works for the de facto standard alignment format (i.e., BAM) compression that is the pressing need at present. We align new sequences to a reference sequence using SOAP3, a GPU-based aligning software, and summarize mapping properties and information for exact mapped reads. ...
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  • 2

    CDSbank

    multi-sequence extraction, filtering & formatting

    CDSbank is a database that stores both the protein-coding DNA sequence (CDS) and amino acid sequence for each protein annotated in Genbank. CDSbank also stores Genbank feature annotation, a flag to indicate incomplete 5’ and 3’ ends, full taxonomic data, and a heuristic to rank the scientific interest of a species. This rich information allows fully automated data set preparation with a level of sophistication that meets or exceeds manual processing. Defaults ensure ease of use for typical...
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  • 3
    ECG2HRV

    ECG2HRV

    import and store ECG, associate to clinical data, automatic HRV

    http://www.youtube.com/watch?v=AOzpNMC-FXU This multi-platform application will enable the user to import digital CSV ECGs at any sampling rate and store them in an encrypted local DB along with relevant clinical data of the patient. It also performs automatic QRS complex detection and RR interval classification showing the output in a visual chart that the user can edit to correct sources with artifacts or pats with bad detections.
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  • 4
    LAVA for AFM

    LAVA for AFM

    Lloyd's Algorithm-based Volumetric Analysis for AFM Images

    ...Although developed for determining feature volume, LAVA is also completely compatible with other types of image analysis, such as fluorescence intensity. Work is in progress to provide three-channel functionality, allowing comparison of relative intensity of red, green, and blue channels in multi-color images.
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  • 5
    Geodysseus

    Geodysseus

    Interactive OpenGL map projection and navigation with geodetic utils.

    ...The user clicks on a map or 3D globe to create geodetic traverses. The geodesic can then be approximated with any number of loxodrome legs. Tracks may then be re-projected onto different map projections. The aim is to make a multi-purpose navigational tool for Land, Sea and Air. At present, the program is in early development and should not be considered suitable for navigation. The program comes with documentation in html format.
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  • 6
    Seagull is a multi-protocol traffic generator. Especially targeted towards IMS, Seagull supports Diameter (RFC3588 and all applications) over TCP/SCTP and IPv4/IPv6 , TCAP (over SS7 or Sigtran), XCAP over HTTP and Radius.
    Downloads: 42 This Week
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  • 7

    abc-sde

    approximate Bayesian computation for stochastic differential equations

    ...It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated. Variance components for the "measurement error" affecting the data/observations can be estimated. A 50-pages Reference Manual is provided with two case-studies implemented and discussed. The methodology is based on the research article available at http://arxiv.org/abs/1204.5459 Author's research page is http://www.maths.lth.se/matstat/staff/umberto/
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  • 8
    A High-Order Multi-Variate Approximation Scheme for Arbitrary Data Sets, C implementation of the method described in http://web.mit.edu/qiqi/www/paper/interpolation.pdf, with Python and Fortran interfaces.
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  • 9
    Lagrange Rally 3D

    Lagrange Rally 3D

    3D vehicle simulator based on Lagrangian dynamics to simulate dynamics

    3D vehicle simulator in which vechicle's configuration as a whole (articulated body) , is represented by a 'vector' of generalised coordinates. so concepts like usual position and orientation of main body and wheels is all defined by the generalised coordinates.Using Lagrangian dynamics, theese coordinates are evolving in time in a realistic manner according to F=ma but as if there were also all constraint forces concretasing the presence of joints: hinge, prismatic, rigid connection, etc....
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  • 10
    QVision: Computer Vision Library for Qt

    QVision: Computer Vision Library for Qt

    Computer vision and image processing library for Qt.

    This library contains among other things a set of graphical widgets for video output, performance evaluation and augmented reality. The library also provides classes for several data types usually required by computer vision and image processing applications such as vectors, matrices, quaternions and images. Thanks to a large number of wrapper functions these objects can be used with highly efficient functionality from third party libraries such as OpenCV, GNU Scientific Library,...
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    Downloads: 0 This Week
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  • 11
    "mprfgen" is a multi-port memory generator that can be used for VHDL designs. It can generate either generic or Xilinx-specific (through component instantiation) multi-port memories.
    Downloads: 0 This Week
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  • 12
    flNeuronTool

    flNeuronTool

    A Fast Light Neuron Tracing and Editor Tool

    The flNeuronTool allows users to reconstruct and proofread neuronal morphologies in light microscopy images. The system incorporates automatic tracing and manual editing of neuron reconstruction into a cooperative 3D interactive visualization-assisted environment, which is a powerful tool for analysis of complex neuronal images.
    Downloads: 0 This Week
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  • 13
    Boundary Shift Integral
    Boundary Shift Integral
    Downloads: 0 This Week
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  • 14
    rov-suite

    rov-suite

    Complete ROV Control Suite

    This project aims to create a flexible, cross-platform ROV (remotely operated vehicle) control system based on Qt and the Arduino microcontroller series with multi-platform support. You can view the development blog at http://chrisstechblog.blogspot.com. If you have any questions, comments, ideas or complaints please let us know! We'd love to hear from you how we can improve ROV-Suite! Thanks! P.S. If you want to give us a negative review, please elaborate on why you are giving us a negative review so that we can fix any issues or bugs that you may have found!
    Downloads: 0 This Week
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  • 15
    Multi-SETI@home Monitor. This program was written to monitor SETI@home and BOINC activity that may be running on multiple computers over a network without having to cross mount file systems. Runs on Windows/Linux/Unix.
    Downloads: 0 This Week
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  • 16
    Matlab tool for plotting multi-channel biomedical signals. It is designed for researchers on both engineering and medicine who have to collaborate to visualize and analyze signals. It is the ideal tool to plot electroencephalogram (EEG), Foetal Heart Rate (FHR) and many other signals with the standard tools used in clinical routine.
    Downloads: 0 This Week
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  • 17
    ox_black_rhino

    ox_black_rhino

    black_rhino is a multi-agent simulator for financial network analysis

    This is the outdated code of black_rhino. The new version is maintained and hosted on github. Please see https://github.com/cogeorg/black_rhino
    Downloads: 0 This Week
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  • 18
    Provide a reference implementation of Moving Taylor Bayesian Regression, a method for nonparametric multi-dimensional function estimation with correlated errors from finite samples, as a Python package based on SciPy
    Downloads: 0 This Week
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  • 19
    GriF (Grid Framework)
    GriF is a new JAVA Collaborative Grid Framework developed by COMPCHEM Virtual Organization operating in the EGI Production Grid environment aimed at running multi-purpose scientific applications empowering Grid massive calculations.
    Downloads: 0 This Week
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  • 20
    IsItPrime

    IsItPrime

    A small, basic, yet powerful and competent primality tester.

    IsItPrime is a powerful, cross-platform, multi-threaded standalone application capable of testing massive numbers in several ways through a highly interactive and easily-understood user interface. As of version 2.0.0, IsItPrime and other NCPrime applications no longer require the Visual C++ 2010 Redistributable for Windows. All NCPrime applications released after 1 November 2012 use the Qt framework and thus require Qt libraries (included) for cross-platform compatibility. ...
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  • 21

    MegaTunix Tuning Software

    OSS MEgasquirt, LibreEMS, JimStim tuning software

    MegaTunix is a cross-platform tuning application for some of the available DIY Fuel Injection controllers, including the MegaSquirt (MS1, MS1-Extra, MS2 and MS2-Extra) as well as the LibreEMS EFI system and the JimStim ECU stimulator/development tool.
    Downloads: 4 This Week
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  • 22
    Simured is a multicomputer network simulation whith visual interface to see packet movement on the network. It is multi platform and there are versions in Java and C++.
    Downloads: 0 This Week
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  • 23

    MRmap

    Parametric MRI: T1 mapping, T2 mapping, T2* mapping

    A flexible tool for medical research in magnetic resonance imaging (MRI) to generate parametric images (maps) from multiple types of pulse sequences (IR-prepared, Look-Locker, and MOLLI T1 mapping; single- and multi-echo T2/ T2* mapping).
    Downloads: 5 This Week
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  • 24
    MuPuPriNT

    MuPuPriNT

    A primality/compositeness tester for different types of numbers.

    MuPuPriNT (Multi-Purpose Prime Number Tester) is a primality and compositeness tester for many different types of numbers. It is basic, yet full-featured, and offers several different testing methods for each type of number. MuPuPriNT is built on the GNU Multiple-Precision (GMP) integer + rational library, and is available for Windows, OS X, and Linux.
    Downloads: 0 This Week
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  • 25

    Bouc-Wen-Baber-Noori model of hysteresis

    Compute parameters of the Bouc-Wen-Baber-Noori model of hysteresis

    ...For further information about the toolbox read the documentation and the following papers: - Kalyanmoy Deb, Sameer Agrawal, Amrit Pratap, T Meyarivan. "A Fast and Elitist multi-objective Genetic Algorithm: NSGA-II". Journal IEEE Transactions on Evolutionary Computation (IEEE-TEC). 2002. Vol. 6. No. 2. pp. 182-197. - Gilberto A. Ortiz, Diego A. Alvarez, Daniel Bedoya-Ruiz. "Identification of Bouc-Wen type models using multi-objective optimization algorithms". Computers & Structures. Vol. 114-115. pp. 121-132. 2013.
    Downloads: 0 This Week
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