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Experimental software for timetabling Bus Rapid Transit systems highly efficiently. Also has a number of generic function for manipulating transport data, and so may be convertible to other uses.
These classes are useful for signal processing in Matlab or C++. They bring together tools and methods which may be used interchangeably for Matlab and C++. Their initial use is in conjunction with work towards my degree at UC Berkeley.
HeliconiusDB is a project to develop a database schema and web-based software tools for the study of Heliconius butterflies (and other organisms) in evolutionary biology.
RubyMoss is a Web - Based Framework written with Ruby on Rails, intended to support all analysis and data processing for Mossbauer Spectroscopy.
Written under BSD License.
The Fortran program MOLLY generates atomic positions in a molecule from those of a small number of prototype atoms and the molecule's point symmetry. It is intended as a time-saving aid in preparing input data for computational physics software.
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The NJ toolbox (njTBX) is a matlab object API, built on top of Unidata's Netcdf-Java API to facilitate netCDF model data manipulation. Development of njTBX is a part of 'An Open-Source Community Model for Coastal Sediment Transport' project.
A collection of pre- and post-processors for mathematical software (such as AUTO) to investigate bifurcation problems in non-linear dynamical systems. A self contained subset is RAuto, a collection of scripts and programs for running AUTO on a comman
Vurtigo is a 4D (3D + time) real-time visualization software for guiding cardiovascular interventions. It is primarily intended for use with a magnetic resonance imaging (MRI) scanner, and also actively tracked catheters and navigational devices.
The latest releases are not available on sourceforge; check out the vurtigo.ca link below for the most up-to-date version.
Porcupine2 is a small wearable sensory unit for logging motion data and doing low-level activity recognition. The project includes electronic schematics for the hardware, software for the microcontroller and client-side software for hardware-interaction.
OpenSource project for visualizing protein structure. Written in C++ with Qt and OpenGL the software is designed to be multi-platform (Linux, FreeBSD and Windows). On web: www.msprot.com Copyright 2008 Federal University of Sao Paulo - UNIFESP
QWACK is a computer application aimed primarily at students and scientists allowing them to explore and experiment the concepts of computer programming by using the simple, but yet powerful graphical interface.
Logbus-ng consists in a set of tools to aid developers perform Log Analysis in all the stages: log generation, collection, distribution, storage and analysis. It is designed specifically for Field Failure Data Analysis in critical distributed systems
An R package implementation of a consensus clustering methodology. This package allows users to perform re-sampling statistics based clustering using multiple clustering algorithms to assess the robustness of both clusters and members of clusters.
KinetDS is a software for curve fitting particularly designed for kinetic (mechanistic and empirical) description of a substance dissolution from solid state. It was primarily designed for handling pharmaceutical dissolution tests
Methods and testing of methods for automatic analysis of in situ cyclic
voltammetry data.
This, at least initially, is the code from my masters thesis, which was
done as a contribution to a larger project called Aevum. Aevum is being
developed at t
The DNA Sequence Read Toolkit is a set of programs to convert data from DNA sequencing instruments into formats suitable for archiving, viewing or for onward processing (for example alignment or assembly).
GridABM is an easy-to-use toolkit to develop high-performance agent-based models (ABMs) in Repast. GridABM facilitates large-scale simulation of ABM on multicore computers, local computing clusters, or computational grids.
DevLogger is a software framework used to collect, monitor, and log data from any number of instruments or input devices simultaneously. Initial support provides for serial connections to Radio Shack 22-812 multimeters and My Weigh HD Scales.
MAXIMUS is a genome assembly pipeline which takes the best out of multiple reference assemblies and de novo assembly. The benefits of this approach include better assembled repetitive regions, less gaps and higher accuracy for the resultant assembly.
Software that implements the tabular method developed by Steve Keen for developing a set of differential equations to model monetary flows in economic analysis, modeling and simulation.
pHaskell is a new lenguaje to develop active libraries in a functional way.
pHaskell translate from a haskell like language to C++ template metaprogramming.