NGS compute distro proloaded with pipeline analysis software
...HOWTO:
1) Set VM network settings to a bridged adapter type.
2) Load VM to client
3) From host:
$ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure'
--- passwd = 616287xx
5) or ssh into host with X forwarding, and type runme
This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The first homepage tab links to our pipeline constructer. The second homepage tab links to a xterm session on the client.
Software included (location - name):
path - biobambam
path - bwa
path - bowtie2
path - bowtie
path - cufflinks
path - bcftools
path - tophat
path - scalpel
path - samtools
path - sra-toolkit
path - bamtools
path - delly
path - delly-parallel
path - picard-tools
path - fastahack
path - twoBitToFa
~/prog/java/ - mutect
~/prog/python/ - platypus
~/prog/java/ - gatk
...Every widget is drawed using HTML5 Canvas API in a Javascript based environment.
Drinks was born to allow users to easily realize custom dashboards without any programming knowledge, infact, you can use your instrument on a webpage simply using HTML tags, or using BarMan IDE to create your applications in a click.
DRINKS Toolkit (hardware and software) are released as Open Source project.
The Eight Queens Problem is a chess board puzzle. Eight queens can be placed on the chess board without conflict. Any queen placed on the chess board will not attack any other queen. JavaScript programming language is used.
Intend to reproduce most of the conversational programming functionality of the Fagor 8055TC lathe controller. Web browser interface for easy portability between different OS. Visit project web-site for demo.
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sCal: a small, scientific, script programmable calculator--for & in JavaScript. sCal2: an expansion giving a function/program catalog system with: hundreds of unit-conversions & material properties, programming examples, nearly limitless user-procedures