Search Results for "package"
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Showing 12 open source projects for "package"
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iCn3D
Web-based protein structure viewer and analysis tool
"I see in 3D" (iCn3D) Structure Viewer is not only a web-based 3D viewer, but also a structure analysis tool interactively or in the batch mode using NodeJS scripts based on the npm package icn3d. iCn3D synchronizes the display of 3D structure, 2D interaction, and 1D sequences and annotations. Users' custom displays can be saved in a short URL or a PNG image. The complete package of iCn3D including Three.js and jQuery is in the directory "dist" after you get the source code with the "Code" button. View a 3D structure in iCn3D, input a PDB ID, and click "Load". ... -
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miRge3
Comprehensive analysis of small RNA sequencing data
An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output. miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. -
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Entity-To-Code
Mathematical Functions in an NPM library made with JS and C++
NPM URL: https://www.npmjs.com/package/entitytocode Source Forge: https://entity-to-code.sourceforge.io WIKI Git: https://github.com/BSW-G-D-iph6/Entity-To-Code/wiki -
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StochSD
CSS package for contin., discrete and combined modelling & simulation
StochSD (Stochastic System Dynamics) is a unique CSS package for continuous, discrete and combined modelling and simulation. StochSD eliminates the many problems and errors from modelling discrete objects as continuous. This means that the results from CSS and DES modelling now can be fully consistent. (See the paper "The Full Potential of Continuous System Simulation Modelling" by Gustafsson L & Sternad M.) -
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GCB_package
Stand-alone version of the Genome Complexity Browser
This application allows observing genome rearrangements in prokaryotic genomes. It provides rearrangements frequencies profiles and genomes graph representation. -
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wEMBOSS is a Web interface for the EMBOSS software package for biological sequence analysis. Under wEMBOSS each user has a private workspace (UNIX home directory) on the server, where he can permanently store his data and organize them in projects. The companion suite wrappers4EMBOSS allows to integrate under EMBOSS a number of popular bioinformatic software suites as BLAST, CLUSTAL and MRS.
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Graphical Grammar Studio
An user friendly grammar tool for natural language processing tasks
Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. -
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SciSimulations
A package of science simulation scripts for web browsers.
SciSimulations is a library of JavaScript functions to visual demonstrate principals equations and math in science. The simulations will enable anyone to explore the equations in science, and make the math behind science more than just some numbers on a page. Currently SciSimulations uses the HTML5 Canvas elements so most web browsers will be able to run the simulations except the old versions of Internet Explorer. -
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BioGenie
BioGenie is presented as a complete package for Biological solutions.
Bioinformatics as an emerging research area spreads out many challenges to both the Bioinformaticists and the Bioinformaticians. BioGenie is presented as a complete package for tackling these challenges. Accommodating all three platforms, that is, a desktop application, a web application and a mobile (android-based) application, BioGenie outperforms all existing softwares engineered to assist heavy and complex computations. The GUI is very well-designed guiding the user technically with ease. -
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ArgooMap
A map-based discussion forum ("argumentation map")
...Past and current developers at Ryerson and the University of Muenster include: - Carsten Keßler - Marius Austerschulte - Sepehr Mavedati - Sami Munshi - Matrica Joshi Alternative versions (not yet available here) were developed by: - Aaron Sani (Ryerson) - Soheil Boroushaki (Univ. of Western Ontario) - Ana Simao (University College London) The ArgooMap Sourceforge project page contains two implementations of the package, which diverged from a single older version, ArguMap. The first known as 'Argoomap1' or 'ArgooMap_Rye' is PHP-based... (see readme1st for more). -
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The Generic Genetic Studies Database (GGSD) is a web-based, relational database driven data management software package for the management of large scale genetic studies.
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SimpleSuccess
Framework for PHP and JS
Dieses Framework besteht aus einem PHP MVC Package und der dazu gehörigen JS MVC Komponente. Das Framework ist dynamisch erweiterbar um Packages
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