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  • 1
    JSmol

    JSmol

    JavaScript-Based Molecular Viewer From Jmol

    ...Used in conjunction with the Jmol JavaScript Object (http://wiki.jmol.org/index.php/Jmol_Javascript_Object), JSmol seamlessly offers alternatives to Java on these non-Applet platforms. JSmol can read all the files that Jmol reads. You can do all the scripting that Jmol does. You can create all the buttons and links and such that you are used to creating for Jmol. All of the rendering capability of the Jmol applet is there. JSmol has both a console and a popup menu. JSmol is integrated fully with JSME and JSpecView. A "lite" version of JSmol provides minimal functionality (balls and sticks only) for extremely small-bandwith apps. Released 1/12/2013
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    Downloads: 14 This Week
    Last Update:
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  • 2

    openSEQ

    NGS compute distro proloaded with pipeline analysis software

    ...HOWTO: 1) Set VM network settings to a bridged adapter type. 2) Load VM to client 3) From host: $ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure' --- passwd = 616287xx 5) or ssh into host with X forwarding, and type runme This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The first homepage tab links to our pipeline constructer. The second homepage tab links to a xterm session on the client. Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk
    Downloads: 0 This Week
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  • 3

    medicalcodes

    ICD10CM ICD10PCS NDC (Drug Codes USA) LOINC

    ...Is written in php, javascript, d3.js and is using postgresql as back end. Supports the following Coding Systems: 1. ICD10cm (2014) - Diagnostic Codes. Synonyms search is possible via the Pharmkgb DB and CTD DB - Links to MESH index is provided 2. ICD10pcs (2014) - Procedures Codes 3. CMS Diagnosis 4. CMS procedures list 5. National Drugs Codes (USA). The pharmakological properties of each ingredient are provided from dgrugbank files 6. LOINC codes 7. Provides also part of the ICD10-CM and ICD10-PCS codes as Json files N.B Check the mcodes_prep
    Downloads: 0 This Week
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  • 4
    CHALICE
    Connecting Historical Authorities with Links, Contexts and Entities. CHALICE is a historic placename gazetteer for the UK, published as Linked Data and linked to other widely-used sources of placename reference information on the semantic web.
    Downloads: 0 This Week
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  • 5
    CellPublisher is a free, open source program to improve the navigation of biological pathways. It converts CellDesigner diagrams into fully-featured maps that live inside a browser. The navigation is based on the Google maps API.
    Downloads: 0 This Week
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  • 6
    Goldify is a set of tools that allow automated addition of links into electronic documents. Its main purpose is to allow such addition of links into documents that wish to link to the IUPAC GoldBook (http://goldbook.iupac.org).
    Downloads: 0 This Week
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  • 7
    Web-based AJAX tool for creating diagrams of icons and links between them. Features include Google Maps & Google Earth integration, configurable tool palettes, and automated palette generation from a Google Local query.
    Downloads: 0 This Week
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