Search Results for "utility"
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Showing 57 open source projects for "utility"
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In addition to computing co-expression clusters, Maccu fishes potential co-expressed genes for a given bait set. All results can be further processed via graph-level operations so that we can compare graphs based on different reference data.
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GOBU
Gene Browsing Utility
Gene Ontology Browsing Utility (hereinafter, GOBU, pronounced as "go-boo") is a browsing and manipulating tool for Post-Pipeline genetic data, especially useful for data with GO annotations. With help of GOBU, we expect biologists and their cooperating technicians can pay less effort on common programming stuff. At the same time, GOBU provides an Extendable Architecture which guarantees the possibility of 1. -
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Resolver
A general purpose high precision conversion utility for Java
This is a Java port of my C++ conversion utility from Geodesica-SFX. Currently only Lengths and Areas are implemented. User can enter fractional or decimal values and set the number of divisions for the following units: Pixels•Points (DTP)•Points (HMT)•Pica‑Ems (DTP)•Pica‑Ems (HMT)•Fermi•Angstroms•Microns•Millimeters•Centimeters•Meters• Kilometers•Hectares•Astronomical Units•Light Years•Parsecs•Microinches•Mils•Lines•Inches•Palms•Hands•Feet•Yards•Cables• Furlongs•Rods•Roods•Gunter's Chains•Gunter's Links•Modern Chains•Modern Links•Quarter Acres•Half Acres•Whole Acres• Hides•Miles•Land Leagues•Fathoms•US Nautical Miles•US Nautical Leagues•UK Nautical Miles•UK Nautical Leagues•Admiralty Miles• Admiralty Leagues•User Units•Digits•Standard Cubits•Bible Cubits•Royal Cubits•Palestinian Cubits•Sacred Cubits•Greek Cubits• Sumerian Feet•Roman Feet•Roman Paces•Roman Furlongs•Remen•Stadia•Megalithic Feet (theoretical)•Megalithic Yards (Thom)•Megalithic Miles (theoretical). -
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JDiskMark
Java Disk Benchmark Utility
JDiskMark is a powerful and versatile disk benchmarking tool written in Java, designed to help accurately measure the performance of your storage devices across different operating systems. Whether you're testing HDDs, SSDs, or network drives, JDiskMark provides reliable insights into your disk's read and write... -
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com-hfg
java library for XML, HTML, or SVG generation + bioinformatics classes
The com.hfg (hairyfatguy.com) library is a collection of utility classes that make it easy to construct XML, HTML, XHTML, or SVG in an object-oriented way from within your Java application or webapp. It also contains other IO utilities and bioinformatics classes for phylogenetic trees, taxonomy, and multi-chain proteins. Requires JDK1.8. -
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Raman Data Search and Storage
A Raman spectra library with search and storage function.
...A search function was implemented to enable users to find a specific peak value. Using the asterisk character (*) as a placeholder for one or more unknown peak value(s), the software will return the best match(es). Besides the search utility by the Raman band positions, which was proven to be priceless in the interpretation of Raman spectra, the RDSS software gives the user the ability to display and inspect the Raman spectra quickly and very efficiently. Users can zoom into the Raman spectrum, shift in any direction the wavenumber and the intensity axes, and if any part of the spectral display is clicked, that region will be highlighted and the specific wavenumber returned. ... -
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Java Marine API
NMEA 0183 library for Java
Java Marine API is an NMEA 0183 library for Java. For furher info and latest source code, see project's Github pages. https://github.com/ktuukkan/marine-api/ -
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NNumberGenerator
A simple number generator with a user-friendly interface.
NNumberGenerator is a useful utility for generating random integer and decimal numbers. Requires JDK 19.0.2 at least to run. -
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The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
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ebfformat
An Efficient Binary data Format
EBF, which stands for Efficient Binary Format, is a binary file format for reading and writing binary data easily. Reading writing routines are currently available in C,C++,Fortran,Java, Python, IDL, MATLAB. A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided. The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code if needed. It is also designed to simplify the programming of input output routines in different programming languages. ... -
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Jacksum
a free cross platform checksum utility, supports 58+ hash algorithms
...This site has been left for historical purposes ONLY, you find older Jacksum versions here. Please visit the GitHub site for current development. Jacksum 1.7.0 is a platform independent checksum utility (written entirely in Java) for computing and verifying (integrity check) checksums, CRC and hashes (fingerprints). It supports 58 popular hash algorithms and a lot of unique features. -
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Mass-Up
MALDI-TOF data analysis tool
Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data. Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data. -
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toothache
A conversion utility from proprietary TIF exams to DICOM standard
This application is able to convert TIF radiology exams to DICOM objects -
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Mapyrus is software to plot Geographic Information System data to PostScript, PDF, SVG and web image files. Mapyrus combines a BASIC-like scripting language, reading GIS datasets and running as either a utility program, a Java Servlet, or as a webser
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COPanno
COPanno optimizes the panels cuts.
COPanno is now at http://download.tuxfamily.org/copanno/ COPanno is a small utility to find the best solution for cutting rectangular panels in a defined-size sheet. * v1.2 Introduce multi-threading (calculation is up to 8 times faster) and internationalization support. English and French translations are done. * v1.3 Add per panel orientation keeping Copanno est un utilitaire de calepinage donnant la meilleure manière de découper des panneaux rectangulaire dans une feuille de dimension définie... -
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nmea4j
NMEA libary for java (protocol of GPS devices)
The aim of this project is to create a full utility suite for NMEA protocols (best known from GPS devices). First goal is a full implemenation of the NMEA 0183 protocol 3.0 (without proprietary extensions). The library provides parsers for NMEA sentences, gpsd-like network daemons and data generators for simulation and testing. This allows advanced sensor handling from cellphones/tablets/laptops with GPS up to vehicles/ships with NMEA sensors on board. -
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MattsMathTools
MathTools is an aid in preparing printed math tests.
Matt's MathTools is a Java application designed as an aid in preparing printed math tests. It is easily embedded in other Java applications or it can be used alone as a single-user desktop app. It includes a scripting environment, numerous demonstration classes and several general utilities. A scripting tutorial is also available. -
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SoftSmithy is a platform for open source Java developers. The core is an extended Java utility library. In the future there may be open source software build on this library.
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PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes. -
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Easy Equations
Hand Written Equation Creator
Easy Equations is a utility using which one can write the mathematical equations. The focus of this utility is to provide user friendly access to write mathematical equations which is helpful for students, lecturers, mathematicians and Research persons who prefer using mathematical equations in a document, PowerPoint or web sites. Works on Windows as well as Linux platforms. -
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AJT is a set of utility classes for Java for handling some bioinformatics data, graphics file export, GUI widgets, and classes that should long have been added to the official Java API.
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drl2g
Convert drl files to g code
This is a utility to process and convert drl files to efficient g code, which will help in drilling PCBs using a CNC. The snapshots are based on the linuxcnc axis program to visualize the results of the program using different algorithms. -
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gocad-projector
Java utility used to reproject GOCAD objects between map projections
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The Prajna project is a collection of tools and utility classes combining visualization, geographic displays, data fusion, and semantic reasoning into a cohesive toolkit for enhancing information discovery and reasoning.
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JSpoor is a utility software for logging and recording of user interface events and actions during working sessions of users with a Java/Swing Software. It captures and records both high level (semantic) actions and low level actions such as mouse moves.
