java library for XML, HTML, or SVG generation + bioinformatics classes
JaxoDraw: Feynman Diagrams made easy!
MiRDeep*
Unicode XML TEI text analysis platform
Particle Image Velocimetry
Your graphical tool for Syntactic/Semantic Structure Analysis of texts
Binner for assembled metagenomes
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
MathTools is an aid in preparing printed math tests.
Openstreetmap Layerd SVG Exporter
Graphics generator for pie diagram matrix from spreadsheets
cy2fluxviz : Cytoscape 2 plugin for flux distribution visualization
A drawer for origami crease pattern