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Showing 12 open source projects for "random file"
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LoopMatcher
Find sequence-specific stem-loops in FASTA and GenBank files.
LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID. Requirements JAVA Runtime 8. It's highly recommended to have a multicore processor... -
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NumericalChameleon
a free cross platform precise unit converter, supports 6000+ units
The NumericalChameleon is a free, open source, cross platform software in order to convert units. It converts numbers with a precision of up to 1000 significant figures. It supports more than 6000 units in 94 categories. It has been localized in 10 languages. -
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physicsmata
API for all possible cellular automata that work same at all angles
Its strange how the "sorted pointers" normalizing makes just about any random function, as long as it connects the inputs to the outputs on some path, vibrate as some nonlinear shape of wave. This could be used as a game interface for evolvable musical instruments or fluid puzzle games. Physicsmata is similar in effect to SmoothLife but simpler and pure Java. The cellular automata API takes a function to run at each point. Its parameters are sums of screen brightness (n color dimensions are... -
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TOVAL: Toms Java Library
Library with classes for common programming issues.
TOVAL comprises a set of java classes for common programming issues. It includes utils for arrays, lists, sets and collections for convenient handling and modification, but also support for mathematic definitions concerning logic (clauses + resolution) together with some algorithms for permutations, powersets and resolution. Additionally it contains a number of types for multisets, matrices with object keys and much more. -
Ship Agents FasterGemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
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Javamony
A Student's Approach to the Phylogenetic Problem
...I distribute Javamony, as I did Pysimony, hoping that it will be of educational value to someone else or at least vaguely amusing. Upcoming features will be: - Support for Amino Acid sequences - Support for additional file formats (e.g. Nexus) - Multithreading - Additional scoring methods (e.g. maximum likelihood) -
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knowceans
Utility classes from maps to search engine to random samplers
Collection of several multi-purpose Java libraries. --- knowceans-tools = collection of Java utility classes. --- Highlights: --- org.knowceans.util: IndexQuickSort, TableList: apply order of one array/list to others +++ Vectors, ArrayUtils: array convenience +++ RandomSamplers, CokusRandom, ArmSampler, Densities: random sampling and distributions +++ Arguments: command line parser +++ StopWatch, Which, ExternalProcess: runtime stuff +++ ParallelFor: OpenMP workalike +++ PatternString,... -
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Want to count the number of syllables in a word? Want to create a random haiku? This Java application can do both. Just add the JAR file to your project for access to these basic classes. We use CMU's pronunciation dictionary to count each syllable.
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Platform independend, multithreaded fractal generator. Fine control over thread/CPU usage; unlimited precision; smooth/random/function coloring; supports color map files (over 1600 available); many image file formats. For any Java 1.5+ (32/64 Bit) VM.
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JVnSegmenter is a Java-based and open-source Vietnamese word segmentation tool. The segmentation model was trained on about 8,000 sentences using Conditional Random Fields (FlexCRFs). This tool would be useful for Vietnamese NLP community.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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CRFChunker: Conditional Random Fields Phrase Chunker (Phrase Chunking Tool) for English. The model was trained on sections 01..24 of WSJ corpus and using section 00 as the development test set (F1-score of 95.77). Chunking speed: 700 sentences/s
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CRFTagger: Conditional Random Fields Part-of-Speech (POS) Tagger for English. The model was trained on sections 01..24 of WSJ corpus and using section 00 as the development test set (accuracy of 97.00%). Tagging speed: 500 sentences/s.
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Java Randomness Test Suite is a gui application to run randomness tests on random stream resource (file or algorithm). Application can be run in command line. Includes general statistical tests, NIST and DIEHARD tests.
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