Search Results for "extraction"
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Showing 59 open source projects for "extraction"
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CERCA
CERCA – Citation Extraction & Reference Checking Assistant
CERCA is an open-source research tool that supports the verification of bibliographic references in scientific manuscripts. It extracts references from PDF files and checks their existence and consistency against authoritative metadata sources, producing explainable diagnostics, audit logs, and reproducible reports. It is intended for: - Researchers performing final manuscript checks - Reviewers assessing reference consistency - Editors supporting editorial quality control -... -
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OpenVigil
Open pharmacovigilance data extraction, mining and analysis tool
...FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting ratio or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. OpenVigil 1 operates on raw data, OpenVigil 2 on cleaned data (using drugbank.ca and drugs@FDA), OpenVigilFDA uses the official FDA online API. ... -
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aseryla
Aseryla code repositories
This project describes a model of how the semantic human memory represents the information relevant to the objects of the world in text format. It provides a system and a GUI application capable of extracting and managing concepts and relations from English texts. https://aseryla2.sourceforge.io/ -
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TIES
A smart search engine for medical documents
TIES (Text Information Extraction System) is a clinical text search engine that uses Natural Language Processing techniques to extract medical concepts from free text clinical reports. It provides secure de-identified access to this information and has in built collaboration tools and honest broker functionality. It is licensed for academic use under the BSD license. -
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@Note2
@Note2 - A workbench for Biomedical Text Mining
Biomedical Text Mining (BioTM) is providing valuable approaches to the automated curation of scientific literature. -
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JPIV
Particle Image Velocimetry
JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/ -
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Wandora is a general purpose information extraction, management, and publishing environment based on Topic Maps and Java. Wandora has several data storage options, rich data extraction, import and export capabilities and embedded server.
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Musaheb
An Arabic collocation extraction tool
“Musaheb”, an Arabic collocation extraction tool that has been designed and implemented to overcome the limitations of existing collocation extraction tools. “Musaheb” is able to extract n-gram collocations up to 5-gram, in addition to extracting the collocates of the nodes (the word-types we are looking for its collocates) within a window size of zero to 15 words. Moreover, it provides eight collocation statistics to calculate the strength of the collocation, and permits the input of various constraints during node selection and collocate extraction. -
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Semantic Assistants
Natural Language Processing (NLP) for the Masses
Semantic Assistants support users in content retrieval, analysis, and development, by offering context-sensitive NLP services directly integrated in standard desktop clients, like a word processor, and web information systems, like a wiki. -
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Adele
Adhoc Data Exploration - Live & Easy
Adele was developed to simplify the daily work with data. Use it as a swiss knife to fill the gap between your work with spreadsheet application like MS Excel and enterprise servers like SAP ERP. Specialized tools like Rapid Miner, KNIME or similiary stuff should not be replaced. But Adele is designed for business people working with spreadsheet applications to analyse their data. There are many technical concepts in an easier way included. For example realtime OLAP, transformations,... -
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Phrasal
Statistical phrase-based machine translation system
...Distinctive features include: providing an easy to use API for implementing new decoding model features, the ability to translating using phrases that include gaps (Galley et al. 2010), and conditional extraction of phrase-tables and lexical reordering models. Developed by The Natural Language Processing Group at Stanford University, a team of faculty, postdocs, programmers and students who work together on algorithms that allow computers to process and understand human languages. Our work ranges from basic research in computational linguistics to key applications in human language technology, and covers areas such as sentence understanding, automatic question answering, machine translation, syntactic parsing and tagging, sentiment analysis. -
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jAudio is a project implementing a number of common feature extraction algorithms for analyzing audio in java. Output is either in Weka's ARFF format or the ACE format. Can be used either as a GUI application, command-line application, or embedded. The primary repository is on github (dmcennis) which pushes to this projects github repository.
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Drug Extraction
Drug name extraction
Drug name recognition and normalisation/grounding to DrugBank ids and standard names. Package provides 2 taggers: 1. DrugTagger - CRF-based with DrugBank presence feature (see feature set for details). 2. DrugnameGazetteer - gazetteer/dictionary-based. Dictionary created from DrugBank.ca database. Both taggers include grounding/normalisation to DrugBank ids and standard names. Feature set: Word, Word-1, Word+1, Word-1_Word, Word_Word+1, DrugBankPresence, POS DrugBankPresence... -
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KneeTex is an open–source, stand–alone application for information extraction from narrative reports that describe an MRI scan of the knee. Given an MRI report as input, the system outputs the corresponding clinical findings in the form of JavaScript Object Notation objects. The extracted information is mapped onto TRAK, an ontology that formally models knowledge relevant for the rehabilitation of knee conditions.
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SyntheticWSI
Tools to generate and visualize artificial whole slide images
...Collection of tools to help generate artificial Whole Slide Images (WSIs). A WSI is stored as a ZIP archive of JPG tiles, and this software contains a tool to visualize this format. SVS files can be used directly for texture extraction (thanks to the included Bio-Formats library). Main source files in package fr.unistra.wsi.synthetic. -
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DCTFinder
Extract title and creation time from web page.
...DCTFinder is a system that parses a web page and extracts from its content the title and the creation date of this web page. DCTFinder combines heuristic title detection, supervised learning with Conditional Random Fields (CRFs) for document date extraction, and rule-based creation time recognition. DCTFinder is released under CeCILL free software license agreement. The system is described in the following paper (see 'Files' section): Xavier Tannier. "Extracting News Web Page Creation Time with DCTFinder". Proceedings of the 9th Language Resources and Evaluation Conference. ... -
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The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
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xAffect
Sensor Middleware
xAffect is a software framework for online recording, processing and storage of multi sensor data. It was developed at FZI Research Center for Information Technology, Karlsruhe, Germany. xAffect can be used as a flexible, customizable middleware between physiological sensors and applications which require online feature computation (e.g. biofeedback or affective computing). Moreover, it can also be used as a standalone application for data acquisition and visualization. -
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FALCON - Text Search Java Project
JSON based text search Java Project
...It also takes care of jumbling of words within query and spelling mistakes. Commonly used techniques in this project are Natural Language Processing, Information Extraction and Question-Answering Architecture. ---------------------- - Latest Version - ---------------------- Details of latest version can be found on project website - http://geekdadaji.com --------------------------- - CONTACT DETAILS - --------------------------- CREATOR : SWAPNIL A JADHAV (saj1919) EMAIL ID : dadajibudhau@gmail.com WEBSITE : http://geekdadaji.com LICENSE : CC BY-NC 4.0 -
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OPTIMA cidoc-crm Semantic Annotation
Semantic annotation of archaeology reports with respect to CIDOC-CRM
The semantic annotation system OPTIMA is the result of Andreas Vlachidis PhD work, (supervised by Prof. Douglas Tudhope, University of Glamorgan, UK). OPTIMA performs the NLP tasks of Named Entity Recognition, Relation Extraction, Negation Detection and Word Sense Disambiguation using hand-crafted rules and SKOS terminological resources (English Heritage Thesauri and Glossaries). The resulted semantic annotations are associated with classes of the (ISO 21127:2006) CIDOC Conceptual Reference Model (CRM) and its archaeological extension, CRM-EH. OPTIMA is also targeted at the detection and recognition of contextual relations between CRM entities. ... -
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Handwritten Signature SDK
Java SDK useful to develop handwritten signature verification app
Handwritten Signature SDK supports: dynamic time wrapping (DTW), extended regression (ER), signature sampling, direction hash and features extraction: see wiki for more info. -
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NISA
Image Stack Analyzer
OpenCV powered image stack analyser for data extraction and preparation. Can be used in conjunction with nanocalcFX. You can get sample data at the NISA homepage. Currently in pre-alpha state. -
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is-sfe
Information System "Supercritical Fluid Extraction"
Information System "Supercritical Fluid Extraction" has developed as tool for collecting and analyzing the experimental data from various supercritical fluids experiments. The final target is to help to scientists who worked with supercritical fluids to predict some useful properties such as density, solubility etc. In order to calculate molecular descriptors, parse SMILES and another applied purposes is used Chemistry Development Kit (https://sourceforge.net/projects/cdk). -
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TML - Text Mining Library for LSA & CMM
TML is a Java Library for LSA and extracting Concept Maps from text
TML has moved to http://www.villalon.cl/tml.html and the code to https://github.com/villalon/tml -
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Anteater
Annotation Tool to Extract Endangered Animals from Text Resources
The goal of this project is the extraction the information listed below from texts downloaded from the Federal Register (https://www.federalregister.gov). The texts are mainly applications for permits, notices about given permits, etc. This software tool is developed by the Max Planck Institute for the History of Science (http://www.mpiwg-berlin.mpg.de) in collaboration with Dirk Wintergrün and Etienne Benson.
