Search Results for "cluster computing"

...RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs.

JCuckoo is the project aimed at creating a simple and universal platform for distributed computing and object migration in Java. JCuckoo will enable creating both small-scale (cluster-like) networks and wide-area (even worldwide) computing.

Webfem is a JAVA/XML Web application for numerical (FEM) simulations. The Web architecture allows sharing on cluster of computers and grid computing. The Obj. Oriented design allows the users to add new elements,shape functions,partial differ. equations

The Integrative Biology VRE is a web-based graphical user interface and repository that provides an environment where biological simulation experiments can be constructed without the need for any knowledge of unix, cluster computing, or shell scripting.