Search Results for "algorithm code writer"
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Showing 18 open source projects for "algorithm code writer"
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AlgoSim
AlgoSim : création, analyse et exécution des algorithmes
AlgoSim un Logiciel de création, analyse, simulation et exécution des algorithmes. Il ne nécessite aucun apprentissage de langage de programmation. Ce logiciel n'utilise pas un éditeur de texte comme les logiciels classiques de programmation. Ce logiciel peut être utilisé par des débutants pour apprendre la programmation et exercer leurs connaissances. Il peut être utilisé par des professionnel pour tester leurs algorithmes, les vérifier et générer des programme présentables (pseudo-code ou... -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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Advanced Trigonometry Calculator
Precision Trigonometry: Advanced Calculator for Complex Math
Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by the Portuguese Renato Alexandre dos Santos Freitas. Also author of... -
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LoopMatcher
Find sequence-specific stem-loops in FASTA and GenBank files.
LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID. Requirements JAVA Runtime 8. It's highly recommended to have a multicore processor... -
Build Securely on Azure with Proven FrameworksMoving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub. 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download -
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The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics Jenetics is an advanced Genetic Algorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function.
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JSiteDescriptor
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too). -
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smartblob
tiny code, html webcam game or plug brain in each blob, java server
...I'm planning a huge multiplayer world, some blobs played by people holding a bendable loop game controller (tape a 1 meter cut of thick extension cord into a loop) in front of webcam and bend it to bend your blob on screen, and other blobs controlled by AI. This is a game for general AI research in a fun way people can do together. The physics and vision algorithm is half working in version 0.3.0. The gameplay is better experienced in 0.2 which is controlled with the mouse so you dont have enough freedom of movement compared to webcam. This small file contains its own source code including occamserver, a tiny general java server I built which I'll adjust to allow http streaming connections to stay open for faster ajax than a new web call each time. ... -
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Stemmer Gujarati
Offline stemmer for Gujarati , which is one of 22 Indian languages.
...It relates morphological variant words to corresponding common root. For example "પ્રતિઉપયોગી" is word which has stem " ઉપયોગ". Stemmers are language specific tools. The design of a stemming algorithm requires a significant level of linguistic expertise. There has been lot of significant work in the development and evaluation of stemmer for non-Indian languages, but very less or no significant work has been done on Indian front especially for Gujarati language.The code of this stemmer is based on algorithm designed under guidance of Prof. ... -
Build Securely on AWS with Proven FrameworksMoving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.
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JCycles
[frozen] A library for computing cycles in graphs or in Java code.
[This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (<... -
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MathParser Java - Math Parser library
Mathematical Parser for Java
This project gives a mathematical parser for converting a simple string expression into a result which can be managed for using in other calculations, all in Java. Using a couple lines of code, you'll be able to parse complex arithmetic expressions efficiently. This library is powered by Dijkstra's Shuting-yard algorithm. The library has no dependencies with other external libraries. Dependency <dependency> <groupId>com.google.code.mathparser-java</groupId> <artifactId>mathparser-java</artifactId> <version>1.0.0</version> </dependency> Expressions supported (Mar/09/2013) - Arithmetic operations. ... -
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Java Evolutionary Computation Library
As of 2012-12-18, this project may now be found at Google Code.
As of 2012-12-18, this project may now be found at http://http://code.google.com/p/paba JECO is a Evolutionary Computation Library deveoloped in Java. It includes a variety of evolutionary optimization techniques such as genetic algorithm, genetic programming, evolutionary mapping methods, particle swarm optimization, ant colonies, etc. -
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vMAGIC is a Java-API which helps creating VHDL generators and analyzers. vMAGIC comprises three parts: 1st a VHDL'93 compliant parser, 2nd a programming model to easily create and modify VHDL constructs, and 3rd a VHDL Writer to generate code.
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Java API for implementing any kind of Genetic Algorithm and Genetic Programming applications quickly and easily. Contains a wide range of ready-to-use GA and GP algorithms and operators to be plugged-in or extended. Includes Tutorials and Examples.
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iScore measures the interestingness of news articles in a limited user environment. It is an online learning algorithm that combines a large set of disparate features to classify documents. To download the source code, please use subversion.
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Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
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Porter Stemmer
Java version of Porter's Stemming algorithm
...The stem() method will return the stem as will toString() after stem() has been called). The clear() method will wipe the Stemmer buffer and allow a new word to be input. This version extends Martin Porter's original stemming algorithm by allowing capital letters to exist in words. This version should also be plugged in wherever the old algorithm is used with few accommodations necessary. The code in this version is more readable (in my opinion) than the old version. There is a main at the bottom that shows how to use the Stemmer.
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