SuRankCo
Supervised Ranking of Contigs in de novo Assemblies
.... Renard
(http://www.biomedcentral.com/1471-2105/16/240/abstract)
PLEASE NOTE, it is recommended to read the paper and the readme.txt file before using SuRankCo.
Update Jun2015:
* Minor changes to enable BAM support.
Update Feb2014:
* Added support for FASTA/SAM assemblies in addition to ACE/FASTQ(QUAL).
NOTE: features of FASTA/SAM assemblies do not include BaseCount, BaseSeqmentCount and ContigQualities yet.