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Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume
Tipa2Unicode is a little stand-alone application which lets you input Tipa-shortcuts and then displays Unicode symbols. You can then paste either side of the conversion to LaTeX or a word processor.
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Now part of Apache's Mahout machine learning project at http://mahout.apache.org/-- please see there for latest info and code and releases and support!
Artificial chemistry low-level simulation : make up our own rules of construction to simulate open-ended, creative evolution. See http://organicbuilder.sourceforge.net/ for more information.
MIDlet showing status of GPS device connected to cellphone. Show availability of GPS device/signal, current position, speed, course and satellites' position and signal power. Log tracks in GPX format.
ViSoR provides a visualization of several social indicators, statistics and crimes for the Ruhr Area in Germany. It allows users to view and compare particular suburbs or regions in this area.
JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.
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Jather aims to provide an easy to use library for clustered process execution in Java. This library aims to provide a simple API and allow applications to add clustering functionality with little change to the existing code.
E-BioFlow enables the scientists to design workflow using three different perspectives: control flow, data flow and resource perspective. The workflow tool is based on the Yawl engine and has support for BioMOBY and WSDL services and Perl and R scripts.
With OSM Parser it is possible to process OpenStreetMap geodata for various purposes. For example, it can be used to extract streets or other OSM elements for user defined regions to generate a street directory.
Designed to collect fisheries data linked to GPS coordinates from small fixed wing aircraft. SQL database runs on WinCE, Palm PDA & other platforms. Program was written using SuperWaba: a robust java-like development environment for handheld devices.
DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
The main objective of the ONE project is to enrich Digital Ecosystems with an decentralised negotiation environment and enabling tools that will allow organisations to create contract agreements for supplying integrated services as a virtual organisation
Jazoo. The Zoo of virtual evolving creatures. Mostly focused on evolving communication between intelligent agents. It's in VERY early stage. Everyone's invited to join, participate, suggest, discuss etc.
The ProM Import Framework allows to extract process enactment event logs from a set of information systems. These can be exported in the MXML format, which is the standard event log data format for Process Mining analysis techniques.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
Utility to translate "dvorcodes" (Dvorak keycap-encoded phrases) into their actual key values. For instance the dvorcode for "password" is "laoo,rpe". Use this tool to discover your dvorcode passwords when you must enter them on a QWERTY keyboard.
Software tools for visual psychophysics research. The focus of these tools is amblyopia research, but they can be used in some related visual neuroscience research tasks.