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AlViz is a research prototype for visual ontology alignment implemented as multiple-view plug-in for Protege using J-Trees and Graphs. Based on similarity measures of an ontology matching algorithm AlViz helps to assess and optimize the alignment results
A program for organizing and commenting textual citations from texts (books, articles or other published works) for use in producing scientific or academic publications. Works together with EndNote, RefWorks and BibTeX. Exports to PDF and Word (RTF).
The Antigen Variability ANAlyzer (AVANA) tool uses information entropy to measure variability in protein sequence alignments. It also compares alignments using mutual information, identifying the mutations that characterize specific sequence sets.
J2dPathway project are composed of several packages: J2dPathway(biological pathway viewer), Pyrus Pathway Editor (biological CAD), and DNASequenceViewer (platform-independent sequence viewer).
This proyect presents a system, which, from a corpus of documents, extracts information about a theme area, and a pedagogical components collection. This information is packed into fine granularity learning objects (metadata included).
This research project seeks to use compiler techniques to perform an attribute-based data-flow analysis on (MOF/UML)models allowing for a syntax-driven validation of a model's static semantics as well as an abstract interpretation of i dynamic behavior.
Convert a "line string" from a .kml file to a "route" in another .kml file. I started this project to use google maps for routing at home and a very simple GPS-device for following the route while on the road.
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CILib is a framework for developing Computational Intelligence software in swarm intelligence, evolutionary computing, neural networks, artificial immune systems, fuzzy logic and robotics.
Ever got confused while remembering all the various physical properties of all the standard 20 amino acids? Then use Amino Acid Finder!!
It has a built-in database and contains information about all the physical properties and lets you to search them
A SOA-based framework for multilingual question answering (QA) systems that answer natural language questions with the help of a domain ontology and structured answer data sources from freely specifiable domains.
iGOR: interactive graphical ogr reprojector. iGOR is a windows graphical user interface for the GDAL ogr2ogr {http://www.gdal.org/ogr2ogr.html} developed in Java.
This Project moved to https://sourceforge.net/projects/synbiowave/ because the name GeneWave is a registered trademark... Please do not use this project anymore.
Open Source GPS Tracking System. It allows to use mobile phones with J2ME support as mobile trackers and see its tracks on Google Maps online. There is a web RESTful API for GPS data input. See details on http://redmine.wannatrak.com
ElectroMimic is an electronic circuit simulator in Java™. The simulator is focused on the piecewise-linear models normally used by undergraduate students, but can also be linked with external simulation software for more realistic results.
SOLAPLayers is a cartographic component which enables navigation in geospatial (Spatial OLAP or SOLAP) data cubes. It aims to be integrated into existing dashboard frameworks in order to produce interactive geo-analytical dashboards.
BrainFX, a customization of GenericFX for the field for functional Magnetic Resonance Imaging (fMRI). It defines java classes, data hierarchy and data standard for the field of fMRI.
MCS is a tool that exploits the Monte Carlo method and, with a complex algorithm based on the PERT (Program Evaluation and Review Technique), it estimates a project's time.
MCS is a opensource project and it was devolped by Java Programming Language.
JIPL (Java Image Processing Library) is an attempt to provide an efficient way to load, filter, manipulate, and save images. The goal is to provide an intuitive and extensible library.
ARTADE (ARabidopsis Tiling-Array-based Detection of Exons) is a standard tool for the automatic annotation of genome-wide tiling-array data in Arabidopsis. ARTADE is a program originally written by Dr. Tetsuro Toyoda, RIKEN, Japan.
This is a visual pipeline framework for batch processing data. It is a plugin to Eclipse Platform. It is a general framework designed to be customized for specific field. One example is http://sf.net/projects/camba
The PlanetLab Visualizer is intended to help users to run their experiments on PlanetLab hosts. The main advantages are the ease of use and the support for Linux and Windows OSes.