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The Open Optimization for Java provides a framework and the implementation of commonly-used algorithms found in Graph Theory and Network Optimization, e.g. shortest path and postman problem.
The goal of the GeneText project is the development of a software package that will enable users to dynamically generate an information summary page from multiple sources given a search term. Fields of interest are biology, genetics and bioinformatics.
The metabolomics standards initiative (msi) will develop a Core Information for Metabolomics Reporting (CIMR) recommendation and a more formal and semantically defined corresponding ontology (msi-ontology).
An easy to extend, highly graphical, easy to use 2D robot simulator specialized for path planning algorithms. Can be used in testing various robotic algorithms, and already used for comparison of path planning algorithms like RRT, RRTConnect, PRM, RboT..
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CLIMS is a Laboratory Information Management System for protein Crystallography that features a novel graphical interface to a relationaldatabase. CLIMS has been reviewed as one of the top two LIMS for crystallographers by CCP4.
ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences
Geoclipse is a collection of Eclipse plugins, that allow you to add mapping capabilities to your Eclipse Rich Client applications. Current development happens on github! http://michaelkanis.github.com/geoclipse
Peruser is a open-source lightweight knowledge application framework. Peruser speaks XML and RDF and is implemented in Java. Peruser code runs within Cocoon, as a standalone webapp, as console programs invoked through ant, or as embeddable java code.
This is a suite of several software agents to provide a complete architecture of lexical base as proposed in Didier Schwab's PhD. thesis. It will be used for automatic translation, information retrieval and other natural language processing tasks.
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Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
Digital Archive and Retrieval Tool (DART) presents engineers with an easy to use alternative to typical SVN or other CVS type systems. It allows engineers to easily archive data and provides an interface for managing and accessing store information.
Development of a prototype software module for CV's management. Module will be integrated within an existing application for human resources' management. Technologies: based on mvc, java, struts, jsp, struts:layout
JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts
This project seeks to develop tools for investigations into computational aspects of algebraic geometry over free groups. In particular, we are developing software implementations based on the theoretical work G. S. Makanin, A. Razborov, and others.
Crow - Computational Representation Of Whatever. A platform for the integration and mining of complex and distributed data. Represents cross-linked semantic web documents as a network of software objects and offers easy ways to filter, and sort them.
WGAViewer is a suite of JAVA software tools that provides a user-friendly interface to annotate, visualize, and help interpret the full set of P values emerging from a whole genome association (WGA) study.
The BioArray Software Environment (BASE) v1.2 is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis. PrognoChip-BASE extends BASE v1.2.16, providing more functionalities.
OpenAMIS (Open AgroMeteorological Information System) is customable free and open software for websites providing agrometeorological information to farmers and agroindustry.
The Virtual Laboratory for Earth and Planetary Materials (VLab) collaborative GRID-based environment. Concentrating on scientific computation workflows and auto-generation of visualization services. http://vlab.msi.umn.edu
Java framework for face detection and face recognition based on different plugin and filter types. Includes Eigenfaces in pure Java, OpenCV detection via JNI, integration of the Betaface.com Web Service, skin color filter, Adobe XMP Export and a nice GUI
An attempt to design minimum cost broadband networks with the use of a modified version of the Particle Swarm Optimization method. A GIS subsystem is used for the visualization of data and results.
The Genomic Diversity and Phenotype Connection (GDPC) written in JAVA uses web services to make XML formatted data publicly available. The GDPC Browser (front-end GUI) can access these services, and other applications can use the API.
BDD-Based Deductive Database, an implementation of Datalog that uses Binary Decision Diagrams as the underlying data structure. This allows it to represent exponentially-sized relations efficiently.
Trauma registry suite; Data collection application and server scripts to build trauma data warehouse and perform web-based analysis reporting. Cross-platform compatible for Windows, Apple, Unix, or Linux.
Sarf is an integrated software system (engine) that can generate arabic verbs, derivative nouns, and gerunds, and inflect them, starting from their triple and quadruple roots, depending on the grammar and morphology rules, and using the system database.