Search Results for "assembly source code" - Page 8

JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. It has internal projects manageable and...

Composer for OWL-S-based Semantic Web Services that can load SWRL-based Semantic Bridges to mediate between heterogeneous ontology concepts. Exports semantic. enh. BPEL code. Dependency to BerliOS-project: "sembpelext". Also see QualiPSo.org for details.

This project is about stochastic simulation methods and their applications to physical systems. We develop interactive books, which can be used by students to study physics using free resources. The books contain text and Java source code.

A cross platform GUI for several code formatter, beautifier and indenter like AStyle, GNU Indent, GreatCode, HTML Tidy, Uncrustify and many more. Main feature is a live preview to directly see how the selected formatting option affects the source code.

MorseCrane is a LEGO Mindstorms NXT robot crane using LeJOS NXJ. It receives Morse code messages via a sound sensor and types them on a keyboard.

An open-source collection of materials for lectures, tutorials, labs, and software for a variety of primarily Computer Science courses. The materials include various course notes, presentation slides, source code samples, etc.

A program for exploring complex functions, much like the now out-dated f(z). Domain colored plots of complex functions. Click evaluate. Uses reflection so you can code almost anything for your formula. All java. Please help.

current build is now 12_8_11: Code reformulation, not only to improve/repair, but also to take into account libraries that I don't release (e.g., the applet one). The Jars are compiled under Sun Windows JVM 1.7.0_1.

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the...

Interactive Natural Image Segmenation for object cutout for image composition/background replacement. Implementation in Java, tested on version 1.5.0_17. Complete source code available.

A package of java classes for the implementation of the UTASTAR algorithm.

A Generalized Combinatorial Approach for Detecting Gene-by-Gene and Gene-by-Environment Interactions

Modelio-Open is a project hosting a set of open source extensions (SoaML, SysML and UML Testing Profile) for a previous version (1.2) of the Modelio Free tool . Currently, the lastest version (2.x) of Modelio modeling and generation tool is available at http://modelio.org/downloads/download-modelio.html. All extensions are downloadable at http://forge.modelio.org/projects.

A simple rule runner which reads its rules from a light-weight XML format. Java programmers can extend and use these classes to provide text-based rules which are kept external to the application code and can be changed without recompiling the code.

A fast, simple Java library for calculating Voronoi lines given an array of input coordinates. It does not feature code to display the results graphically.

Developed at Medical Research Council UK to meet a common clinical trial need to track various types of clinical data. Users log dates of completed tasks against participant ID. Simple, useable, reduces lost data! Makes graphical progress reports.

A phologenetic supertree construction/assembly tool using triplet similarity as the objective function.

The project includes a software, which uses an AI for autonomous sailing of a small sailing boat, equipped with various sensors and GPS. There are various methods for evaluation and improvement of sensor data, route planning, collision avoidance.

Its an Eclipse 3.5 Plugin. It can be used to find linear paths for unit testing of any method. The linear path covers all the child methods and till leaf level of the hierarchy. The packages which should be covered in the path can be controlled.

This is a pipeline that is used to store an EST or Genome assembly information including reads and their alignment in a mysql database. Further more, it provides a set of scripts to mine SNPs and other statistics from the assembly.

ECL is a system-level specification language for HW/SW designs and is based on Esterel and C. The ECL compiler parses ECL, writes Esterel and C, and uses the Esterel compiler to produce an implementation. Originally developed at Cadence Berkeley Labs.

Android Auto Tester utilizes Android's monkey runner and hierarchy viewer to automatically traverses the hierarchy of an Android application's GUI and simulates user inputs from the host side, without accessing the application's source code.

This program allows you to create a transmission hologram using just a computer, a laser-printer, and an overhead transparency. This hologram will behave like one created using a laser and can be projected or viewed with a point source.

This is an IDE for 8051 which can be used to write and simulate assembly language program and find out errors if any. The project implements almost all 8051 functions. It visually shows the content of all register and memory.

Atomic Transformation Code is an EPL-licensed low-level model transformation language implemented upon the Eclipse EMF project. It is an intermediate layer created with the goal of executing any model transformation language, such as QVT, or RubyTL.