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TrypC was developed for digesting protein sequences into peptides using fully, semi, and nontryptic cleavage conditions. Associated libraries allow direct loading of data from FASTA files.
Adamant is a java application for annotation of microarray array designs. The software enables MIAME-compliant annotation of sequences spotted onto arrays and can produce output files in MAGE-ML and other data formats used by public microarray data repos
CollOPort provides a web-based portal for a group of researchers to use to collaboratively manage an observatory or experiment. It consists of several components, including topic-based collaborative content, discussions, proposals, and voting.
Baldr, aka Balder, is a plagiarism prevention software. Inspired by late researches in computer sciences, it’s able to compare documents using only properties linked to data compression.
Free Open Source VoiceXML editor programmed in Java (Swing). The VoiceXML document is regularly parsed, a tree view is built and syntax errors are reported in a specific table.
febrl-gen is a Java-based frontend to Febrl, an open-source data linkage system written in Python. Users can configure the parameters of a linkage project through the frontend, and febrl-gen will generate a Febrl-ready configuration file.
Automatic Conversion Tool for Accessible Web (ACTAW) is a project that tries to improve the Web Accessibility in an automatic way. ACTAW applies the WAI guidelines 1.0 defined by the World Wide Web Consortium (W3C). Developed in Java.
JUndo is a declarative object-oriented programming language with functional, and intensional programming characteristics. Applications include multi-level undo and sophisticated error recovery. See http://verdantium.blogspot.com/
JavArch is a simple gate-level and above simulator. It is written in Java so it is portable and uses Java's builtin event-driven mechanisms to reflect how electronics actually work.
OntoExtractor is a way of building ontologies that proceeds in a bottom-up fashion, defining concepts as clusters of concrete XML objects. From a set of XML documents the application generates a taxonomy. OntoExtractor has been developed so far by the Kn
Magic Fixed Point, it's an library that abstracts the use of fixed point math for environments that doesn't have floating point operations or in places that you don't want to use the traditional floating point operations.
Google() meets the Matrix. Red Piranha combines Lucene (Searching Ability), XML-RDF (ability to learn), Tomcat (for P2P Power) and Spring (Ease of use) to not only let you find anything, anywhere, but to actually understand what you are looking for.
The Java Aspect Metamodel Interpreter (JAMI) is a research framework for modeling and experimenting with aspect-oriented programming languages. Common language design concepts and their operational semantics are modeled, and can be run by an interpre
Java framework for face detection and face recognition based on different plugin and filter types. Includes Eigenfaces in pure Java, OpenCV detection via JNI, integration of the Betaface.com Web Service, skin color filter, Adobe XMP Export and a nice GUI
Navigating Research Vessel through Ightaria, observing stars, landscape, and solving two geometrical puzzles. For High School students and other serious people hungry for Alien Geometry and Numbers.
VxmlSurfer is a modular, multi-platform, extensible VoiceXML 2.0 interpreter, geared to Web browsing as opposed to telephony. VxmlSurfer is currently used as a user interface for the HearSay non-visual Web browser.
The GPS Simulator simulates a GPS receiver which emits NMEA sentences over Bluetooth. It can be used to test location based applications on real mobile devices, in particular on mobile devices which have a JSR 179 implementation based on a connected GPS.
PIC Development Studio is a simulator for the PIC16F84 microcontroller. It also provides a plugin framework making it possible to develop custom components. A library of ready-made components is included.