Search Results for "tools" - Page 7
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Showing 404 open source projects for "tools"
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Bayesian Network tools in Java (BNJ) is an open-source suite of software tools for research and development using graphical models of probability. It is published by the Kansas State University Laboratory for Knowledge Discovery in Databases (KDD).
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ADOPS
Automatic Detection Of Positively Selected Sites
ADOPS is a bioinformatics tool that automatizes the detection of positively selected sites given a set of unaligned nucleotide sequence data. ADOPS implements a complete workflow that integrates three well-known bioinformatic tools: T-Coffee, MrBayes and Codeml (PAML). -
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SMLEditor
Prototype editor for the SDEM Mapping Language
The Gateways Team of the Live-Virtual-Constructive Architecture Roadmap Implementation (LVCAR-I) effort is developing a set of tools that will support the gateway community. One of these tools is the Simulation Data Exchange Model (SDEM) Mapping Language (SML) Editor. The tool provides the ability to import two SDEMs in their native language and subsequently view the entities that need to be mapped between the two SDEMs. The SDEM Editor also allows the user to create these mappings and store the result in an SML file. -
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ns-2 Trace Toolkit
This toolkit allows you to analyze and validate ns-2 traces
ns-2 Trace Toolkit was developed to help users to manage and debug ns-2 trace files. It is particularly useful for users that generate ns-2 trace files with other tools such as VanetMobiSim or SUMO (Simulation of Urban Mobility). With ns-2 Trace Toolkit, users can debug their trace files by generating histograms for: (1) node speed, (2) node x-position, and (3) node y-position. These histograms can give hits about concentration of nodes. Additionally, the tool allows users to simulate the movement of the nodes, in different modes: step-by-step and continue motion. ... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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HLAgile
Tools for distributed simulation
This project is devoted to producing tools to help HLA developers write software that is less tied to vendor specific libraries and/or particular FOMs. -
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Security Officers Management and Analysis Project (SOMAP) is all about defining security management work methods and supplying Security Officers with tools to do their job more efficient and following standards easily.
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openSCADA
openSCADA® is an open source SCADA system written in JAVA
...It is platform independent and based on a modern system design that provides security and flexibility at the same time. openSCADA is flexible. It is not an out of the box solution, but a set of tools that can be combined in many different ways. It provides development libraries, interface applications, mass configuration tools, front-end and back-end applications. openSCADA is ready to rock. It is used 24/7 in several installations around this world. openSCADA is supported. So if you prefer a fully supported, out of the box instead of a “build it yourself” solution you can contact IBH SYSTEMS GmbH and let us do the job. ... -
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cnvHiTSeq
cnvHiTSeq is a set of tools for detecting CNVs using sequencing data.
cnvHiTSeq is a set of Java-based command-line tools for detecting Copy Number Variants (CNVs) using next-generation sequencing data. cnvHiTSeq uses standard BAM files as input. -
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The Prajna project is a collection of tools and utility classes combining visualization, geographic displays, data fusion, and semantic reasoning into a cohesive toolkit for enhancing information discovery and reasoning.
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Stop Cyber Threats with VM-Series Next-Gen Firewall on AzureGain integrated visibility across all traffic in a single pass. Deploy Palo Alto Networks VM-Series to determine application identity and content while automating security policy updates via rich APIs.
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Java & MPEG-7 based tools for annotation and retrieval of digital photos and images (Caliph & Emir). LIRE has moved to https://github.com/dermotte/lire. Caliph & Emir have moved to https://github.com/dermotte/CaliphEmir.
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SPiM2Eclipse
Eclipse plugin for Stochastic Pi Machine
Stochastic Pi Machine (SPiM), created by Microsoft, is a programming language for modeling biological processes. Two tools are available from Microsoft for simulation. A web application Visual SPiM, and a destkop application SPiM Player. Both simulation tools require to be run on a Windows platform. Fortunately Microsoft has also released a command line version for Linux and Mac OS based on OCAML however this version will only output a CSV file for the simulation results. ... -
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MionChrom
Signal processing for chromatography
MionChrom interprets ASCII data from GC-C-IRMS systems, plots it, identifies peaks and autointegrates the results. The user can manually integrate peaks with different tools. The results is reported in *.XLS, *.TXT and *.PNG. ------------------------------------------------------ MionChrom is soon to be replaced by MionMass which isn't a open sourced project. -
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Ontology Testing
Part of the XD Tools plugin for ontology testing.
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Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
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Jnomics
Jnomics is a collection of cloud-scale DNA sequence analysis tools
Jnomics is a collection of cloud-scale DNA sequence analysis tools -
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Darwin 2: Java Framework for Evolutionary Computation (genetic algorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components.
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CUO
Codon Usage Optimizer
CUO is a GUI-based multiplatform software written in Java. It is open source and built with a user/developer-friendly structure. The main function of the software at the current development stage is to optimize genes to be transformed into the Chlamydomonas reinhardtii chloroplast genome although it can be used to optimize genes into other hosts as well. The main tool in CUO, Moptimizer, introduces a semi-automatic way of gene optimization which provides more flexibility and accuracy during... -
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ipmems
Real-time data acquisition and visualization software
Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module. -
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A group of useful tools for working with 802.15.4 networks. Currently includes a sniffer that interfaces with Wireshark in Windows/Linux (and maybe Mac OS X too), allowing you to do 802.15.4, ZigBee, and 6LoWPAN Sniffing.
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A very simple command line tool to convert OSM files to Shapefiles. Written in Java. Think of it as a self-study project.
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Analysis
Application to creating charts.
The goal of project is delivering useful and simple tools to creating charts. Functionality is provided by modules/plugins (OSGi technology). It allows you to create your plugins or customize Analysis application (by changing installed plugins in application). The Application, thanks to JAVA technology, is portable on the most operating system. In Files page you can find the application and also patches to its. -
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GAMES ESMI
The Energy Sensing and Monitoring Infrastructure of the GAMES project
This is part of the GAMES Project, which consists of a set of innovative methodologies and Open Source ICT tools for designing and managing energy efficiency in IT Service Centres. The ESMI is the monitoring and sensing infrastructure which allows the fine-grained measurement and provides both an event-based and a real-time stream of data conveying information about the energy consumption in the key points of the overall system. It is completed by a set of Nagios plugin and an assessment tool which implements some green Performance Indicators and integrates data mining with the self adaptive controllers of the entire framework. -
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Linking Yabi with RDA
This software system enables publication of YABI workflows to the RDA.
...To help make this process easier, the CCG has developed YABI, an Internet based workflow application that is aimed at biologists who wish to conduct bioinformatics analysis. YABI integrates bioinformatics tools and data via an intuitive workflow creation and management environment. YABI can be used to access the NCI-SF in Bioinformatics and the tools available through the Embl Australia EBI mirror hosted at the University of Queensland. With the support of ANDS, QFAB has developed this software system to enable the publication of services and collections based of Yabi workflows and datasets. ... -
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OpenMCD
Eclipse debugging tools for ecu development
OpenMCD wants to become a top-class collection of open source, eclipse based development and debugging tools for the development of electronic control units (ECUs). MCD stands for measurement, calibration and diagnostics: three activities often performed during the development of software for embedded and mechatronic systems.
