Showing 480 open source projects for "sql command line"

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  • 1
    HAWK - PDF Text Search Java Project

    HAWK - PDF Text Search Java Project

    No more support for this project - TAKE A LOOK AT FALCONSEARCH

    No more support for this project - TAKE A LOOK AT FALCONSEARCH "https://sourceforge.net/projects/falcontextsearch/"
    Downloads: 0 This Week
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  • 2
    guiLiner provides a representation of another program's options and information, enabling one to run a command line program directly from a GUI. In other words, guiLiner creates a GUI for almost any command-line program.
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  • 3

    MendelScan

    Variant scoring and linkage mapping for family exome sequencing

    MendelScan is a tool for prioritizing candidate variants in family-based studies of inherited disease.
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  • 4
    Java application for training and deploying text processing applications such as part-of-speech taggers, based on a re-implementation of Brill's algorithm in Java.
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  • 5
    MpcReader retrieves comet and asteroid orbital data in MPC format from the web and store it on your computer in different formats. The data is fetched from the MPC. The main job of MpcReader is to convert plain MPC data to the format needed for KStar
    Downloads: 0 This Week
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  • 6

    FishingCNV

    Copy number variation (CNV) detection in exome sequencing data

    ...The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.
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  • 7
    LExAu: Learning Expectations Autonomously. Library for on-line data driven statistical machine learning.
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  • 8

    MSTParser

    MSTParser is a non-projective dependency parser that searches for maxi

    MSTParser is a non-projective dependency parser that searches for maximum spanning trees over directed graphs. Models of dependency structure are based on large-margin discriminative training methods. Projective parsing is also supported. mstparser 0.5.1 is now available via Maven Central. If you use Maven as your build tool, then you can add it as a dependency in your pom.xml file: <dependency> <groupId>net.sourceforge.mstparser</groupId> <artifactId>mstparser</artifactId> ...
    Downloads: 0 This Week
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  • 9
    A collection of Java ports of open source terrain and solar system generation packages. Code has been extensively refactored, extended and documented. GPL License with exception for required libraries.
    Downloads: 1 This Week
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  • 10
    Niah (Statistical Disclosure Control)

    Niah (Statistical Disclosure Control)

    Niah supports k-anonymity statistical disclosure control assessments

    Niah is a simple java tool for use in statistical disclosure control risk assessments. It implements the k-anonymity model of disclosure risk for data in csv in format. This work was developed as part of a PhD project at the University of Glasgow and during an internship with the Scottish Government.
    Downloads: 0 This Week
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  • 11

    drl2g

    Convert drl files to g code

    This is a utility to process and convert drl files to efficient g code, which will help in drilling PCBs using a CNC. The snapshots are based on the linuxcnc axis program to visualize the results of the program using different algorithms.
    Downloads: 0 This Week
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  • 12

    TML - Text Mining Library for LSA & CMM

    TML is a Java Library for LSA and extracting Concept Maps from text

    TML has moved to http://www.villalon.cl/tml.html and the code to https://github.com/villalon/tml
    Downloads: 0 This Week
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  • 13
    CorpusSearch finds syntactic structures in a corpus of annotated sentence trees. It can be used as a research tool on a corpus, or as a development tool for building the corpus.
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    Downloads: 8 This Week
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  • 14

    MiniKakofonix

    Asterix UDP multicast recorder

    This program is capable of subscribing to an UDP multicast feed containing (live) radar data in Eurocontrol Asterix format. The received UDP frames are stored in a recording file. A new (raw) Asterix recording file can be created every x minutes. The previously recorded Asterix filename contains date and timestamp. This tool can be used to do continuous 24/7 Asterix multicast recordings.
    Downloads: 0 This Week
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  • 15
    SPIZD stands for Stress Probing Invasive Zap Destructor; it's a command-line stress test tool used to determine how many simultaneous (concurrent) connections servers can handle. Protocols: http, pop3, pop3s, imap, imaps, smtp, smtps, ssh, radius.
    Downloads: 0 This Week
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  • 16

    JPacketGenerator

    UDP Packet Generator (Stream generator)

    ...Works with a packet receiver to control the network status as Bandwidth, RTT, jitter, Loss % etc etc... Set Source Address, Destination address - Port Packet Size Stream Bandwidth And press start Command Line interface available java -jar JPacketGenerator.jar srcAddress srcPort dstAddress dstPort bitRate_bps All parameters are mandatory and with parameters the generator require no GUI or windows manager to work. If The project will be useful I'll post some more detail or helps about the usage.
    Downloads: 0 This Week
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  • 17
    PoliMaR (Policy Matchmaker and Ranker) is a framework that permits a Semantic Web Service matchmaking and ranking based on Non-Functional Properties (NFPs).
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  • 18

    DeNovoCheck

    DeNovoCheck: Inheritance analysis for NGS trio data

    DeNovoCheck is intended to be used for inheritance analysis in NGS tio data. For rare dominant Mendelian diseases, patient-parent trios are often used to reduce the number of candidate variants. The algorithm bases the inheritance prediction on the data available in the parental BAM files and allows for a fast and reliable selection of potential de novo variants.
    Downloads: 0 This Week
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  • 19
    Command line fibonacci series calculation program.
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  • 20
    Seqshell

    Seqshell

    A JAVA GUI for performing the function of Tophat and Cuffdiff

    Combines the Tophat and Cuffdiff functions in one GUI interface. tophat and cuffdiff are required to be pre-installed in the system. By modifying the program, it can be used to execute any command line programs even R packages since R can also be run from commandlines. New functions: Batch processing function for Tophat. You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders. An alert email will be sent to your email address when the job is done. (You will need to modify the source code to change the content to meet your special needs) Run-time information will be displayed in a JAVA output window.
    Downloads: 0 This Week
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  • 21

    cnvHiTSeq

    cnvHiTSeq is a set of tools for detecting CNVs using sequencing data.

    cnvHiTSeq is a set of Java-based command-line tools for detecting Copy Number Variants (CNVs) using next-generation sequencing data. cnvHiTSeq uses standard BAM files as input.
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  • 22
    IRIS is an extensible reasoning engine for Datalog extended with function symbols, unsafe rules, negation, locally stratified or non-stratified programs, XML schema data types and a comprehensive and extensible set of built-in predicates.
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  • 23
    GEPETTO - Gene Prioritization in Java

    GEPETTO - Gene Prioritization in Java

    GEPETTO (GEne Prioritization ExTended TOol)

    GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein...
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  • 24
    An assessmemt tool of sequence repeats for short read sequencing.
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  • 25

    JGBParser

    jgbparser, gbk parser, genbank parser, bioinformatics

    We present an alternative library for development of bioinformatics Java applications. a Java implementation of JGBParser was built. It consists in a library, able to analyze text files in the GenBank Flatfile (GBF) format.
    Downloads: 0 This Week
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