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User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files
FreeLIMS is a Laboratory Information Management System ( LIMS ). Manage samples; create sample types from methods & parameters; easily generate reports & certificates; fine tune user rights. FreeLIMS is Open Source and Free.
Modyna is an open source application to model dynamic systems and simulate their behaviour. Modyna lets you define a system visually. It automatically builds the equations to simulate the systems behaviour. Simulation results are shown as graphs.
Plugin for JOSM (OpenStreetMap editor) that makes a grid of streets from only two. It traces parallels to the existing ones and make all intersections. We need it because our Country have a lot of cities with a regular design and lot of square blocks.
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The NA_WorkSheet is a set of algorithms coded in Java that implements various Numerical Analysis techniques. The tool may be used for graphing, root finding, differentiation, integration, interpolation, linear systems solving, and matrix operations.
This project is a simulator and data visualization tool used by the Queen's University Solar Vehicle Team in the 2005 American Solar Challenge. Its purpose is to simulate a solar car's battery, speed, power etc. for a given stretch of road.
ProteinShader is a molecular visualization tool that can produce illustrative renderings of proteins that approximate what an artist might create using pen and ink. This free platform-independent program is written in Java and OpenGL Shading Language.
Java API for implementing any kind of Genetic Algorithm and Genetic Programming applications quickly and easily. Contains a wide range of ready-to-use GA and GP algorithms and operators to be plugged-in or extended. Includes Tutorials and Examples.
A bioinformatics package to analyse ESTs (Expressed Sequence Tags) easily. It contains functionalities of ESTs for EST submission, Batch BLAST and BLAST result parser, etc. easiEST contains JAVA GUI applications for analysing ESTs or other sequences
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
NOTE: please refer to OPPL 2. OPPL is a preprocessor language that allows users to define macros for altering OWL ontologies. The syntax is very simple and intuitive, offering a very abstract and high level "scripting" language, for example for int
SeEvolution is the first application that lets you see the effects of mutation events on 3D models of chromosomes. It takes you on a journey through time, showing you the changes that are necessary to go from the genome of an organism to another.
Scan, the Semantic Content ANnotator, is a semantic pipeline that helps connecting information extraction tools to semantic database. UIMA-based, it allows easy plugin-writing: information extraction, ontology control, store in RDF Repositories.
ERepSim presents an agent-based cloud simulation environment integrating electronic institutions from multiagent research to simulate Internet-of-Services systems.
AliCS is a cognitive software whose main goal is to improve the visibility of information by eliminating the troubles created by the redundancy of symbols.
Collection of Java Applications related to Scientific World. All these applications have their source code available and can be easily changed by other programmers.
Visit http://www.hcroboting.com/ for more information.
Earth3D is a program to display the earth as a 3D globe (including heightfields) in real-time. One can zoom until cities become visible. It uses huge datasets that are loaded on demand over the internet. It is possible to embed dynamic data into the view