Now part of Apache's Mahout machine learning project at http://mahout.apache.org/-- please see there for latest info and code and releases and support!
jSim for Gromacs is a Graphical User Interface for the Molecular Dynamics Package Gromacs. It has a project style interface to organize your md simulations. It is also possible to start md simulations on remote computers with ssh.
Tipa2Unicode is a little stand-alone application which lets you input Tipa-shortcuts and then displays Unicode symbols. You can then paste either side of the conversion to LaTeX or a word processor.
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JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.
The main objective of the ONE project is to enrich Digital Ecosystems with an decentralised negotiation environment and enabling tools that will allow organisations to create contract agreements for supplying integrated services as a virtual organisation
Jather aims to provide an easy to use library for clustered process execution in Java. This library aims to provide a simple API and allow applications to add clustering functionality with little change to the existing code.
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The ProM Import Framework allows to extract process enactment event logs from a set of information systems. These can be exported in the MXML format, which is the standard event log data format for Process Mining analysis techniques.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
A compiler to improve relation management between mobile users. This compiler will handle data islands for data transportation between a client mobile phone and a server node accesing a cellular network.
Utility to translate "dvorcodes" (Dvorak keycap-encoded phrases) into their actual key values. For instance the dvorcode for "password" is "laoo,rpe". Use this tool to discover your dvorcode passwords when you must enter them on a QWERTY keyboard.
The nofdp IDSS is an open source application for modeling flood control measures and 1D hydrodynamic flood simulation. Additional modules for ecological and spatial analysis, multicriteria evaluation and communication are included.
Planning Tool is a tool developed by QualDev Group (Universidad de los Andes, Bogota, Colombia) created to support the planning process and to track project's activities for all the projects worked in the group.
ScreeningAssistant is a software based on JOELib and dedicated to the management of chemical databases. It allows the user to select a set of compounds for screening tests (High Throughput Screening or Virtual Screening).
A Java application enabling users to create, edit, and view sports or competition results. In addition, there are facilities to view league tables and other statistical information based on the results.
VT-Layer is a Java library for discrete-event simulation modeling. VT-Layer allows you to create, visualize, and analyze high-performance discrete-event simulations.
JStatCom is a software framework that facilitates the creation of JAVA programs for data based analysis tasks in various domains. It provides ways to call routines from specialized software packages, like Matlab, Gauss, Ox, and possibly others.