Search Results for "linux is" - Page 61

MetaMaster is a Java-based desktop application for defining, managing and manipulating metadata associated with a collection of data files or datasets (both locally and on the network) which are bundled together into "data packages". ANDS-funded

Alignment of the assembled sequences to a reference genome is a common way to obtain a likely order for the contigs, though most of times the final decision is taken by the user. We present the jContigSort, a tool that sorts the genome contigs.

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the...

The Chemical Manager application can be of great help to Organic Chemistry Departments. University research groups will benefit from using this application, since it was optimized for their needs. Currently, Technion Chemistry department is benefiting from it.

Footballer and Football Simulation Markup Language and related Software, Football(er) Simulation Markup Language = FerSML

The plugin allows automatic highlighting of pathways in an easy and understandable manner.

OceanSync is an Hadoop Management System that allows users to control a variety of aspects of Hadoop. This includes a Graphical User Interface that allows a user to perform HDFS maintenance tasks and submit new jobs to the cluster. The OceanSync product sits on top of any Hadoop Architecture.

Proper is a propositionalization framework written in Java containing several algorithms for generating propositional (and also multi-instance) data from relational databases. It produces data that can be used by the WEKA machine learning workbench.

OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.

Semtinel is an application framework for the semi-automatic creation, maintenance and analysis of hierarchical concept schemes (thesaurus, classification or ontology). Semtinel supports the development of new analysis methods and visualization techniques

A package of java classes for the implementation of the UTASTAR algorithm.

Interactive Natural Image Segmenation for object cutout for image composition/background replacement. Implementation in Java, tested on version 1.5.0_17. Complete source code available.

This project aims to be a easy-to-use toolkit of algorithms and utilities for semantic data mining. So far all algorithms are implemented as web services and we provide widgets for their use in the Orange4WS data mining platform.

For electronics engineers, when using open source EDA tools, one of big challenge is component schematic symbols and footprints. If you are creating footprints for component with more than 100 pins, it becomes very time consuming and challenging to create error free footprints. Here is a simple program to create footprints for open source EDA kicad. The idea is to describe footprint in .csv format and convert .csv to kicad footprint format. At preset program supports Kicad only, but can be...

BioX (pronounce as bio cross) is a system for the management of local and remote (currently supporting RMI, CORBA and SOAP Web Services) components such as files and services (e.g. BLAST). Additionally, the components can be composed to workflows.

Includes a signal scaling app, many engineering unit conversion calcs, and a task list pad to keep track of progress or notes.

SGI allows to define and interpret most of undeterministic 2D shape grammars. It supports real-time subshape detection and labeled rules. GUI is designed for easy manipulation with shape grammars: creation of shapes, rules and generation of designs.

Apolda is a plugin for the Gate framework (see http://sourceforge.net/projects/gate/) that annotates texts with labels of concepts from an arbitrary OWL-ontology.

Shrec is a bioinformatics tool for error correction of HTS read data.

OpenBioGeoSim it's a open source software that simulates the stochastic origin and spread of species geographic ranges in a heterogeneous landscape. It's a free alternative based on Gary Entsminger's BioGeoSim.

ssSVMToolbox is a Java application capable of performing supervised and semi-supervised learning tasks with Support Vector Machines. It is based on Spring (http://springframework.org/), RapidMiner (http://www.rapidminer.com) and Eclipse RCP (http://eclip

Coupling the notion that during the search for the minimum of a function we must pass through its solution with a PSO solution generator engine, is the approach for solving, in time domain, a non-linear algebric-differential system of equations.

An open-source collection of materials for lectures, tutorials, labs, and software for a variety of primarily Computer Science courses. The materials include various course notes, presentation slides, source code samples, etc.

This project has been moved to https://github.com/loomchild/maligna . All further development will be done there.