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QSAR is a project that aims to build a GUI that enables people to build quantitative structure activity (or property) relationship models. It will use parts of CDK (cdk.sf.net), JOELib (joelib.sf.net), R (www.r-project.org) and other projects.
JAMBLAST: Java Application Manager for the ncbi BLAST results. It is a graphic application that allow the user to display, filter, sort, import/export, store/manage BLAST results produced with the NOBLAST (https://sourceforge.net/projects/noblast).
OpenBRR2 project focuses on the re-write of the original "OpenBRR - Data" (http://sourceforge.net/projects/openbrr) project. The aim is to develop a hosted data aggregation application for all F/LOSS projects.
This is a visual pipeline framework for batch processing data. It is a plugin to Eclipse Platform. It is a general framework designed to be customized for specific field. One example is http://sf.net/projects/camba
This Project moved to https://sourceforge.net/projects/synbiowave/ because the name GeneWave is a registered trademark... Please do not use this project anymore.
Tool for retrieve, via Web, statistics from bug trackers in free/open source software projects. The aim of this software is to provide researchers with statistics about bug-fixing process in a project
DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
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Calculating 2D-Gray-scale bitmaps Calculation of a 3D-rotation-body form a detected area by using different image processing algorithms. Developed for the German Aerospace Center (DLR). Used Projects: Substance (GUI)
Planning Tool is a tool developed by QualDev Group (Universidad de los Andes, Bogota, Colombia) created to support the planning process and to track project's activities for all the projects worked in the group.
BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
Bringing BOINC and its projects (SETI@Home, etc.) to the Android mobile platform, through translation to Java. ATTENTION: The code is in pre-alpha stage, and currently meant mainly for BOINC developers.
SimpleGrapher is a graphing application for students. It is designed to be as simple as possible to use as well as attractive enough to use in college-level papers/projects for math or science courses.
a free cross platform calculator for calculating BIG numbers
BigAl is a free open source and platform independent software for calculating really BIG numbers. It supports not only standard arithmetic, but also exact period determination, predefined factorials, fibonacci with seeds, factorization, nth root, etc
Open source oBIX server implementation provides an infrastructure that developers can use for device integration in projects with "systems which sense" (to quote oBIX spec).
This project aims to provide a common building block for projects such as
ADEFU, SEA and VISUAL and other scada projects so that they have a common
interface to the PLC\'s they communicate with.
PLC\'s are Programmable Logic Controllers built to
Traffic Light Controlling Comparator (TLCComp) is a simulator of traffic. It is developed from Green Light District (https://sourceforge.net/projects/stoplicht/). TLCComp provides three new light controllers: Fixed-time, Fuzzy1, FuzzyN
GELLO is an ANSI-accredited HL7 standard for creating computable, unambiguous clinical queries. This project creates an open source compiler and client-server IDE. Projects are stored in a subversion repository, and created by the RCP based client.
JMatrixCalc is a Java package used for matrix calculations. It's aim is to make developing many scientific (and non-scientific as well) project much easier and quicker. These projects include: educational software, statistics and many others.
XCalc is an infix calculator for mobile devices that support J2ME, MIDP 1.0 and CLDC 1.0.Its main features are 2d and 3d plotting of functions and its usability. It uses the Real.java library http://sourceforge.net/projects/real-java.
This project provides a Java API to access ELV's (http://www.elv.de) "Dual USB Stepmotor Interface" (USI2). The communication with the USI2 is based on the FTD2xxj (http://sourceforge.net/projects/ftd2xxj) framework.