Search Results for "dr java stable" - Page 54

The GeneDB project is aiming to develop and maintain a curated database resource for multiple pathogen organisms, both partially and completely sequenced.

The i2b2 Center is developing a scalable informatics framework that will bridge clinical research data and the vast data banks arising from basic science research in order to better understand the genetic bases of complex diseases.

Commandline Java package for computing the characteristic polynomial of a hyperplane arrangement.

DEAL (Domain Extraction ALgorithm) is an application for domain analysis. Its main purpose is to extract domain information from existing Java applications and to create different kinds of models from the extracted data, including domain-specific languages.

A bundle of tools for fault injection and -experiments with scope on the emulation of programming faults. Software faults are introduced in the sources of Java applications and can be toggled during runtime.

This project is a maht API based on Java

QS-City 3D is a quality assurance application to ensure the correctness of geometric objects described in the CityGML format. The objects may be viewed in an OpenGL-based 3D view.

A straight-forward Java implementation of a mixture model with pluggable mixture functions, e.g. a mixture of Gaussian functions. The number and dimensionality of the mixture functions is not limited. All critical calculations are performed in log-space.

SeSAm (Shell for Simulated Agent Systems) provides a generic environment for modelling and experimenting with agent-based simulation with a special focus on the easy construction of complex models including dynamic interdependencies or emergent behaviour

The library allows to communicate with BioMOBY Registries and implements all operations such as retrieval, search, registration, deregistration of services, data types etc...

The Inverse Ocean Model (IOM) is a software system for developing customized data-assimilation systems for numerical ocean models. It has also been used with general purpose hydrodynamic and geodynamic models.

Chemical Entities of Biological Interest (ChEBI) is a freely available database of chemical compounds and other small molecular entities. WE HAVE MIGRATED TO GITHUB. To create new issues/comments, please use the following link: https://github.com/ebi-chebi/ChEBI/issues

A bi-directional BLAST tool for orthologue listing with extended facilities (global alignment; paralogue list; GO onthology; dN/dS; etc) working on Win32 compiled versions of NCBI BLAST,FASTA,EMBOSS, and PAML. FILES AVAILABLE AT THE HOMEPAGE.(JAVA coded)

QPME (Queueing Petri net Modeling Environment) is a performance modeling and analysis tool based on the Queueing Petri Net (QPN) modeling formalism.

The Stemmer class transforms a word into its root form. The input word is provided from the add() methods. The stem() method will return the stem as will toString() after stem() has been called). The clear() method will wipe the Stemmer buffer and allow a new word to be input. This version extends Martin Porter's original stemming algorithm by allowing capital letters to exist in words. This version should also be plugged in wherever the old algorithm is used with few...

The program fuses 2 sets of molecules. It tries different relative positions of molecules before binding them, so that there is no or minimal intersection in the resulting molecule. The atom to be fused in a molecule is labeled with an R symbol.

The ROSE reasoner is used to for reasoning with RDFS ontologies and currently supports the RDF, RDFS and eRDFS entailment regimes. An online demo of the RDFS Reasoner can be found here: http://tools.deri.org/rdfs-reasoner/

This project has adopted a parser for the output of SimIt-ARM's sema_count program. It is useful to get statistically relevant information from the output of a batch run of the simulator.

OpenEco.org is home to the OpenEco Community providing free open source tools to track and compare energy usage & reduce greenhouse gas emissions. We're looking for developers to create new modules &/or mashups using our templates. http://www.openeco.or

Uechi APM Web is an APM (Application Performance Management) Open Source Server Performance Monitor written and developed in Java and C # for all Linux and Windows platforms. The Uechi.APM.Web offers a complete resource for unlimited monitoring servers in real time. Have full control of the CPU consumption, memory, disk and network traffic. Communication is done via TCP Protocol Socket connection. More information, please visit: http://uechi.com.br/uechi-apm-web-eng/

JavaGO is an Open Source Java library for the Game of GO (weiqi, baduk) analysis. Implements: base game classes, montecarlo simulations, SGF reader/writer, game variants, GTP, etc. Elegant interfaces/class design. Speed efficient w/small footprint. TDD.

Web application providing analysis of biomedical relationships. Built using the Grails web application framework (http://grails.org/) with MySQL (http://www.mysql.com/) as a back-end datastore and utilizing R (http://www.r-project.org/) for statistical analysis. Developed by the Dana Farber Cancer Institute (http://compbio.dfci.harvard.edu/) and Entagen (http://www.entagen.com).

BIRD stands for Business Intelligence Research and Development and it is part of the CoIntell Corporation (www.cointell.com). The goal of the BIRD community is to develop smart BI solutions Fast!

** IMPORTANT NOTICE ** 10 Feb 2006 Code is being moved to the SMI subversion repository (http://smi-protege.stanford.edu/svn/owl/trunk/) Project will continue to be open source. ProtegeOWL info at: http://protege.stanford.edu/overview/protege-owl.html