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Graphl is a generic graph visualization and manipulation tool written in Java. Graphl reads and writes RDF files, visualizes them in a flexible and customizeable way and allows users to edit them intuitively. Please see project homepage for more info...
RISO: distributed, heterogeneous Bayesian belief networks. Belief network: a probability model defined on an acyclic directed graph; distributed: nodes can be on different hosts; and heterogeneous: allowing different types of conditional distributions.
A Java package to read and manipulate graphs in the GXL (Graph eXchange Language) format, as well as providing a GXL graph editor. Note from admin: This project is discontinued, send me a message if you want to take over.
Goal of Coatie3D project is the development of a 3D graph drawer/ viewer. The purpose of graph drawing is the identification of a pleasant layout for a given graph.
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GoGraph is a tutorial software giving informatics students an easy, interactive and ergonomic way to learn and exercise the graph theory. It is based on JGraph, an open-source graph component for Java.
Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.
The project ASHWOOD has a goal to create an open source Java implementation
of graphs, graph related algorithms, and other useful concepts and algorithms
of CS, Applied Mathematics, and their applications.
Provides the implementation of an adjacency-list based graph. Edges and nodes can be decorated with extra (user-provided) information. Depth-first and breadth-first algorithms are also provided.
Some of the features are:
-create and configure a State Tr
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GraphScript project is a network theory simulator based purely on Java and Java scripting engines.
It is intended to allow fast development, testing and visualization of network theory (graph) algorithms.
JGraphica is a graphical platform for developing oriented and not-oriented graph algorithms. The platform allows the creation and management of graphs, eliminating the burden of creating some custom solutions for graph editing.
fedg extracts knowledge and relevant events in chinese texts to generate Feature Event Dependency Graph.FEDG is a knowledge representation model,meaningful for latent knowledge discovery and efficient reasoning.
Java implementation of operations on undirected or directed graphs, in the aim of providing some simple tools for spectral graph theory and network understanding (-> Telecoms).
prOOst is a provenance storing system, which allows users to store their provenance information in OPM notation. It is based on a graph database and can be accessed for querying and adding of information through a REST interface.
gSemSearch is a tool searching for relation among entities in graph or network structure. It exploits spread of activation algorithm and user interaction with graph data. Posible applications are: Email Search (see http://ikt.ui.sav.sk/esns/) or BI
Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies.
It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements.
Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology).
GraphSpider is a pattern matcher which searches parsed text in phrase-structure tree or dependency graph format for syntactic structures matching a set of patterns in MPL, a regexp-like pattern language. Applications: information extraction, text mining.