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OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.
OceanSync is an Hadoop Management System that allows users to control a variety of aspects of Hadoop. This includes a Graphical User Interface that allows a user to perform HDFS maintenance tasks and submit new jobs to the cluster. The OceanSync product sits on top of any Hadoop Architecture.
This open source software benchmarks the queries per second of an Apache Lucene index. It is an Java implementation and uses MultiFieldQueryParser to form a query.
jWords is a port of WORDS (by William Whitaker, a free latin-to-english dictionary program written in Ada), to Java. Besides the dictionary will be translated to the German language.
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SyMBA is a Data Archive and Integrator that is based on the Functional Genomics Object Model (http://fuge.sf.net) and which archives, stores, and retrieves raw high-throughput data. See http://symba.sf.net and http://www.cisban.ac.uk
The aim of ATRACO project is to contribute to the realization of trusted ambient ecologies. Interactive appliances, collaborative devices, and context aware artefacts, as well as models, services, software components are parts of ambient ecologies.
This is an independent fork of the ensj-core Ensembl Java API. This version of the API does not receive support from Ensembl. The project is still available under the original LGPL license.
Clinical study tracker tracks case study members through activities.
Developed at Medical Research Council UK to meet a common clinical trial need to track various types of clinical data. Users log dates of completed tasks against participant ID. Simple, useable, reduces lost data! Makes graphical progress reports.
Data curation tool to maintain variables for the National Survey of Health and Development managed by the Lifelong Health and Ageing Unit of the Medical Research Council.
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The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
ORE (Ontology Rule Editor) is a platform-independent application to manage
the use of inference rules defined on a model represented by an ontology. ORE offers a easy, well-guided and intiutive GUI to define and test these inference rules.
Framework SRM (Sound Recognizer ME) written in Java Micro Edition capable of recognize abstract sounds and isolated words announcer dependent on mobile devices.
Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.
LoroDux is planned to be a OSM and Java based multi platform navigation software for mobile devices for blind and visually impaired persons. Release of first alpha version was September 10, 2010. http://wiki.openstreetmap.org/wiki/LoroDux
Tifad is a framework to deal with Natural Gas (NG) dispatching for thermoelectrical generation networks. Project blog can be browsed here: https://tifadframework.wordpress.com/
Biomedical Information Management System (BIMS) is a modular multilayer object - oriented software architecture, which provides a flexible computational solution to capture and manage a heterogeneous biomedical data: textual and visual information.
Geomajas is a web mapping GIS software with full vectorial editing capabilities, and support for custom attribute relation models in the browser. It has built-in support for any type of query, selection, filtering, snapping, printing, ...
Tolk is based on the Spring design pattern to Filter & Translate data from data sources eg.TCP/IP connections, text files, databases and Serial (rs232,usb,BT). Typical applications is to manipulate data and manage devices such as IPICO RFID readers
HeliconiusDB is a project to develop a database schema and web-based software tools for the study of Heliconius butterflies (and other organisms) in evolutionary biology.
Basic Electronical Medical Management (BEMM) is an application to control medical data of a set of patients. It is built on top of open source technologies, to provide an integration skeleton of mvn, Datanucleus, Spring, Vaadin, Acceleo technologies.
JGraph is the most powerful, lightweight, feature-rich, and thoroughly documented open-source graph component available for Java. See the project homepage at www.jgraph.com for information and downloads.
MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
EXTE recognizes temporal expressions in a text. Temporal expressions are any references to the TIME e.g.: "today", "12th march 2006", "as soon as he woke up". This analyzer will recognize three languages: Spanish, English and French.