Showing 5041 open source projects for "json-java"

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  • 1
    123FASTQ

    123FASTQ

    An intuitive and efficient tool for preprocessing Illumina FASTQ reads

    123FASTQ performs all the pre-processes of Illumina next-generation sequencing reads (FASTQ files) easier than ever.  Download the quick user manual for the latest version: https://dl.adbioinformatics.net/NGSNeeds/myTools/123Fastq_v1.3_Manual.pdf Authors: Milad Eidi, Samaneh Abdolalizadeh, Mohammad Hossein Nassirpour Supervisors: Javad Zahiri, PhD University of California San Diego  Masoud Garshasbi, PhD Tarbiat Modares University, Tehran, Iran If you use 123FASTQ,...
    Downloads: 2 This Week
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  • 2
    AMBIT:Chemical Structure DB&Web Service

    AMBIT:Chemical Structure DB&Web Service

    Chemical structures database & machine learning with web services API

    AMBIT offers a cheminformatics data management for chemical substances, structures and nanomaterials. Flexible structure, similarity and study queries storage, descriptor calculation and predictive models building via REST web services.User interface for creating read across assessment and generating reports, aligned with regulatory and industrial requirements. Command line applications also available. Integration with third party tools and databases.
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    Downloads: 20 This Week
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  • 3
    IP-XACT 2009/2014  Platform

    IP-XACT 2009/2014 Platform

    Smart GUI/Commandline tools to create IP-XACT( 2009/2014) files

    Smart GUI to create or update IP-XACT often needed for the IP packaging. It has capability create Bus Definitions from scratch to populate BusDef library. One can create IP-XACT Component, Design or Registers by importing Ip in System Verilog/Verilog-95/VHDL, instantiate Bus Interfaces with proper port maps and attributes as needed. Smart GUI to create IP-XACT Registers, Memory Maps, Address Blocks for IP- has feature to import XLS or Verilog . It has Tcl/Python API...
    Downloads: 3 This Week
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  • 4

    Dynamics Explorer

    Dynamical systems research tool

    Dynamics Explorer, (detool for short), is a program designed to let users explore dynamical systems, particularly focused on enabling mathematicians to improve the efficiency and quality of their research in the field of complex dynamics.
    Downloads: 1 This Week
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    Dun and Bradstreet Connect simplifies the complex burden of data management

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  • 5
    JPlotter

    JPlotter

    Plotter for math functions y=f(x)

    JPlotter is an open source math plotter that can draw graphs of arbitrary mathematical functions. Some of the special features are plotting of the derivatives, area calculation, plotting of directional fields of differential equations and plotting of phase and amplitude graph of complex functions.
    Downloads: 1 This Week
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  • 6
    Foucault Analyzer 2.0

    Foucault Analyzer 2.0

    automation tool to analyze Foucault test results of parabolic mirrors

    This software is a remake of Foucault Test Image Analyzer created by Dejan Vucinic and published on SourceForge at 2002 (https://sourceforge.net/projects/foucault/). "If you are an amateur telescope maker, this software can take the tedium out of measuring the shape of your mirror."
    Downloads: 4 This Week
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  • 7
    A series of open source files and programs available to use for developing programs to work with the WowWee Robotics RSMedia Robot. These include a USB serial console, a cross-compiler, a firmware dump program, text-to-speech and source code.
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    Downloads: 9 This Week
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  • 8
    Train Traffic Simulator

    Train Traffic Simulator

    A game about station masters job , managing trains which are arriving

    This program is a simulator for managing arrival and departure for different train traffic for different station , here the player acts just like a station master . Trains are created at different intervals of time with some metadata , the player is supposed to modify the signals and the switches to stop trains at the station or let them pass without any interruption. The goal will be to prevent delays , achieve maximum throughput and most importantly not cause collisions .
    Downloads: 1 This Week
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  • 9
    NGSEP

    NGSEP

    NGSEP (Next Generation Sequencing Experience Platform)

    NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,...
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    Downloads: 5 This Week
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    HOA Software

    Smarter Community Management Starts Here

    Simplify HOA management with software that handles everything from financials to communication.
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  • 10
    Manikin
    A very simple java simulation of the human body to simulate a 3D drawing manikin,with plenty of freedom of movements of the limbs and rotation of the body to implements a 360 degrees view.Source code available.No openGL.Improvements to come !
    Downloads: 0 This Week
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  • 11
    Statistics101 - Resampling Statistics

    Statistics101 - Resampling Statistics

    Use simulation to perform statistical analyses.

    Statistics101 is an Integrated Development Environment (IDE) that uses a simple, powerful language called “Resampling Stats” to develop Monte Carlo programs to analyze and solve statistical problems. The original Resampling Stats language and computer program were developed by Dr. Julian Simon and Peter Bruce as a new way to teach Statistics to social science students. Of course, social science students aren't the only ones who can benefit. Anyone who wants to learn statistics will find that...
    Downloads: 7 This Week
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  • 12
    VirtualCelestialGlobe

    VirtualCelestialGlobe

    A java 3d simple virtual celestial globe. Source code available

    VirtualCelestialGlobe 1.2.7b World Globe 0.0.7 A simple java 3d virtual celestial and world globe. Rotate the globe, magnify it, select the level of detail to show stars and constellations, and the ecliptic. Source code available to everyone to modify it. Star catalogue from Wikipedia. Available plain text star catalogue. Total stars number now reaches 1038. Using Phong shading. No Open GL.
    Downloads: 0 This Week
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  • 13
    This is a Java library, which gives low level access to the WS300 weather station from ELV (http://www.elv.de/). There is a web frontend included which displays the weather data in a browser. The following hardware is supported: * WS300 PC (USB) * IPWE1 (LAN) * Raspberry Pi with FS20WUE (LAN)
    Downloads: 2 This Week
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  • 14

    LINE Solver

    Queueing Theory Algorithms

    LINE is an open-source software package to analyze queueing models via analytical methods and simulation. The solver is available for Java/Kotlin, MATLAB, and Python. LINE features algorithms for the solution of open queueing systems (e.g., M/M/1, M/M/k, M/G/1, ...), open and closed queueing networks, and layered queueing networks. Additional details are available on the project website: http://line-solver.sf.net.
    Downloads: 2 This Week
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  • 15
    OsciViewer
    This program aquires data from the oscilloscope LeCroy9400A, Advantest TR4131 and from the PM3311 (own propriatary bus). Dieses Programm liest Daten der Oszilloskope LeCroy9400A, Advantest TR4131 und PM3311 (eigene proprietäre Schnittstelle) aus.
    Downloads: 0 This Week
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  • 16
    A "gumbo" of tools and concepts supporting rich client applications with 2D/3D user interfaces. Expands on the code from the book "3D User Interfaces with Java 3D", and includes a generous contribution of RCP code from Meyer Sound. Recent work includes a Norden bombsight simulator, with terrain rendering based on NASA's WorldWind SDK. For this effort YourKit has generously made available its full-featured Java Profiler (https://www.yourkit.com/java/profiler/index.jsp), which has proved invaluable in improving simulator performance.
    Downloads: 0 This Week
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  • 17
    miRDeep*

    miRDeep*

    MiRDeep*

    Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction.
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    Downloads: 6 This Week
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  • 18

    detectproj

    Automated detection of the unknown early map projection

    New scientific software supporting the automated detection of the early map projection and its parameters. Useful for studying and analysis of different kinds of maps with the lack of information about the map projection. The analysis is based on the minimization of residuals between control points on the early and current reference maps. Designed for cartographers as well as for enthusiasts. Available free of charge. The awareness of the map projection is primarily important...
    Downloads: 4 This Week
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  • 19
    APBSmem is a Java-based graphical user interface for Poisson-Boltzmann electrostatics calculations at the membrane. APBS version 1.2.0 or later is required.
    Downloads: 0 This Week
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  • 20
    CPSeis is the open-source version of ConocoPhillips' former seismic processing system. Uses Fortran 90 and C/C++ layers for I/O. The new system was designed using an MPI-parallel model and works well on Linux clusters or on individual workstations.
    Downloads: 5 This Week
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  • 21

    rssfiz

    Java science library.

    Java science library. Project contains modules for physics units, particle and quantum physics, molecule, chemistry and universe definitions, also additional math classes.
    Downloads: 0 This Week
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  • 22

    protoFramework

    A Dassault Aviation project to simplify the building of prototypes

    protoFramework is a Dassault Aviation software based on a Java library and other modules as described below, and on specific software developed and maintained by Dassault Aviation. This protoFramework aims to simplify the development of prototypes of any types in several languages or technologies (such as Java, C++/C, Groovy, Python, etc..). protoFramework is based on a concept of service-oriented architecture design (“SOA”), which permits the interconnexion of application components through services, using an application protocol managed by the protoFramework.
    Downloads: 0 This Week
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  • 23
    Autoplot

    Autoplot

    Autoplot is an interactive browser for data on the web

    Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting!
    Downloads: 2 This Week
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  • 24
    Java application for virtual tool shop simulation. Application allows simulation of exchange jobs between some tool shops. Jobs are grouped in projects and are organized in Petri nets (sequences of activities and stores).
    Downloads: 0 This Week
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  • 25

    xpressionparser

    parser of string expressions like sin(pi/4), functions x0+2*sin(pi*x)

    Expression parser of strings like sin(pi/4) is written in c++, javascript, java and php. It is also possible to create functions x0+2*sin(pi*x1) for further calculations.
    Downloads: 0 This Week
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