cy2reposition: Cytoscape 2 plugin for layout reuse
CyReposition is an open source Cytoscape Plugin for the reuse of existing Cytoscape network layouts in new Cytoscape projects.
This project migrated to github
https://github.com/matthiaskoenig/cy2reposition
This is a visual pipeline framework for batch processing data. It is a plugin to Eclipse Platform. It is a general framework designed to be customized for specific field. One example is http://sf.net/projects/camba
Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume
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Want to count the number of syllables in a word? Want to create a random haiku? This Java application can do both. Just add the JAR file to your project for access to these basic classes. We use CMU's pronunciation dictionary to count each syllable.
ACNexus is a bluetooth sensor device, communicating with various clients such as mobile phones. The software suite consists of: ACNexusBT (Arduino firmware), ACNexusMobile (J2ME Phone App), ACNexusQC (Quartz Composer Plugin), ACNexusX (OS X app)
Plugin for JOSM (OpenStreetMap editor) that makes a grid of streets from only two. It traces parallels to the existing ones and make all intersections. We need it because our Country have a lot of cities with a regular design and lot of square blocks.
http://ewi.utwente.nl/~biorange/rshell - The RShell project is a plugin for the Taverna workflow system. It enables one to execute R scripts within the Taverna workflow system. The RShell processor is built on the RServe project. For more info:
Scan, the Semantic Content ANnotator, is a semantic pipeline that helps connecting information extraction tools to semantic database. UIMA-based, it allows easy plugin-writing: information extraction, ontology control, store in RDF Repositories.
TBLTools is a set of GATE processing resources that implements the Fast Transformation Based Learning Algorithm. You can train it to learn rules for NLP tasks such as Named Entity Recognition and Shallow parsing.
GrALoG is a tool for editing and visualising graph-like-structures and the results of algorithms running on them. Through it's plugins GrALoG is hugely extendable, i.e. plugin-developers can define their own graph-like structures and algorithms.
Cytoprophet is a Cytoscape plugin that helps researchers infer new potential protein (PPI) and domain (DDI) interactions. Users input a set of proteins and retrieve a network of plausible protein and domain interactions with a score.
As an Eclipse Plugin the COWOZ-CLient supports electronic paper prototyping of a distributed team of UI-Designers in sketching User Interfaces in the early stage of UI-Design together with iterative and distributed usability testing.
CANTop is an open source project aimed at creating a powerful graphical interface for CANBUS enabled vehicles. It will be designed specifically for persons looking to do Plugin-Hybrid (PHEV) conversions. QT will be used for the initial interface.
The EURP OntoLookup is a CREOLE plugin for GATE http://www.gate.ac.uk/ which uses an OWL ontology for lookup. It has a very fast implementation based on a tree of hash maps.
WOOKI is a peer-to-peer wiki. It based on unstructured p2P network with data replication. WOOT framework synchronizes data. SWOOKI is a semantic extenion of WOOKI. It is implemented as a plugin of WOOKI. SWOOKI is peer-to-peer semantic wiki.
Docgen plugin for Protege provides a quick export of all the content of an ontology (classes, instances and documentation) in various formats (html, pdf, fo...). Images, Graphs, URL are readyly included in reports.
NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues.
Jaude is "Java pour les Astronomes Utilisateurs de Detecteurs Electroniques". Jaude is Eclipse RCP and plugin based. So it will provide an Eclipse interface for JSky library (http://archive.eso.org/JSky/).
This project about providing run-time support for developing Decentralized Autonomic Computing systems (Eclipse Innovation Grand). Currently the project contains a automatic guided vehicle (AGV) simulator and an editor and visualisation as eclipse plugin
Rossi is a entomological tool to simulate the phenology of certain insect by lifestages. In addition, certain indicators are calculated on a yearly basis to assess the risk of a certain insect plague given a yearly temperature regime. Plugin to DIVA-GIS.
Java framework for face detection and face recognition based on different plugin and filter types. Includes Eigenfaces in pure Java, OpenCV detection via JNI, integration of the Betaface.com Web Service, skin color filter, Adobe XMP Export and a nice GUI
PIC Development Studio is a simulator for the PIC16F84 microcontroller. It also provides a plugin framework making it possible to develop custom components. A library of ready-made components is included.