Showing 5041 open source projects for "java"

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  • 1
    NGSEP

    NGSEP

    NGSEP (Next Generation Sequencing Experience Platform)

    NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,...
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    Downloads: 7 This Week
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  • 2
    Night Vision

    Night Vision

    Night Vision is a "planetarium" program written in Java

    ...Viewing options allow the user to control which sky objects to display, which font to use, and manipulation of various star parameters. Time may be set to run at multiple speeds, including backwards. Star charts may be printed. Night Vision is written in Java, allowing it to run on all major desktop systems (includes PCs, Macs, Linux, ...). It has been designed to be readily translatable into other languages. Additionally a port of Night Vision's Solar System window has been ported from Java to the Rust programming language, providing executables that can run directly on the host operating system.
    Downloads: 1 This Week
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  • 3
    ProbeMaker is a framework for design of sets of oligonucleotide probes. It allows the design of different types of probes made up of separate sequence elements. A Plug-in mechanism allows extension of the framework with new functionalities.
    Downloads: 2 This Week
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  • 4
    OpenGXT - Geopatial Analysis Tools

    OpenGXT - Geopatial Analysis Tools

    Spatial Statistics Libraries & Tools for GeoTools, GeoServer, uDig

    The goal of this project is to provide a spatial statistics tools for Geotools, Geoserver WPS, uDig Statistics Toolbox. #. Online Documentation - http://opengxt.mangosystem.com/ #. GeoTools -Download gt-process-spatialstatistics-xx.x.jar file #. GeoServer - Download GeoServer-Extension-OpenGxT-x.xx.x.zip - Unzip and copy two files to the WEB-INF/lib directory of the GeoServer installation. - Restart GeoServer #. uDig 2.0.x Plugin Installation - Name: Spatial...
    Downloads: 14 This Week
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    Krishnamurti's Book of Life D.Thoughts

    Krishnamurti's Book of Life D.Thoughts

    Jiddu Krishnamurti's Book of Life|Libro de la Vida

    FREE distribution of the JAVA-XML multiplatform e-book about Jiddu Krishnamurti's Book of Life (a witty daily cookie-like reflection). Ahora, lea diariamente los pensamientos de Krishnamurti en castellano- Obtenga una agenda gratis.
    Downloads: 3 This Week
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  • 6
    VirtualCelestialGlobe

    VirtualCelestialGlobe

    A java 3d simple virtual celestial globe. Source code available

    VirtualCelestialGlobe 1.2.7b World Globe 0.0.7 A simple java 3d virtual celestial and world globe. Rotate the globe, magnify it, select the level of detail to show stars and constellations, and the ecliptic. Source code available to everyone to modify it. Star catalogue from Wikipedia. Available plain text star catalogue. Total stars number now reaches 1038. Using Phong shading. No Open GL.
    Downloads: 0 This Week
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  • 7
    JSmol

    JSmol

    JavaScript-Based Molecular Viewer From Jmol

    JSmol is the extension of the Java-based molecular visualization applet Jmol (jmol.sourceforge.net) as an HTML5 JavaScript-only web app. It can be used in conjunction with the Java applet to provide an alternative to Java when the platform does not support that (iPhone/iPad) or does not support applets (Android). Used in conjunction with the Jmol JavaScript Object (http://wiki.jmol.org/index.php/Jmol_Javascript_Object), JSmol seamlessly offers alternatives to Java on these non-Applet platforms. ...
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    Downloads: 31 This Week
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  • 8
    AV3DNavigator

    AV3DNavigator

    Um simples software de navegação 3D, desenvolvido em Java.

    Um simples software de navegação 3D, desenvolvido em Java.
    Downloads: 0 This Week
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  • 9
    OsciViewer
    This program aquires data from the oscilloscope LeCroy9400A, Advantest TR4131 and from the PM3311 (own propriatary bus). Dieses Programm liest Daten der Oszilloskope LeCroy9400A, Advantest TR4131 und PM3311 (eigene proprietäre Schnittstelle) aus.
    Downloads: 0 This Week
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  • 10
    A "gumbo" of tools and concepts supporting rich client applications with 2D/3D user interfaces. Expands on the code from the book "3D User Interfaces with Java 3D", and includes a generous contribution of RCP code from Meyer Sound. Recent work includes a Norden bombsight simulator, with terrain rendering based on NASA's WorldWind SDK. For this effort YourKit has generously made available its full-featured Java Profiler (https://www.yourkit.com/java/profiler/index.jsp), which has proved invaluable in improving simulator performance.
    Downloads: 0 This Week
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  • 11
    PFAAT is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. You can download PFAAT from http://pfaat.sourceforge.net/
    Downloads: 1 This Week
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  • 12
    SPELL

    SPELL

    Satellite Procedure Execution Language and Library

    SPELL is a framework composed of an integrated environment for the development and execution of satellite automated procedures. It is capable of running any procedure via different Ground Control System and for any spacecraft. The goal of SPELL is to have a powerful and readable automation language, which can be shared across Satellite Operators and Satellite Manufacturers. If we all use the same language, the cost and the risk associated with automated procedures will go down! SPELL...
    Downloads: 4 This Week
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  • 13
    Systems Biology Markup Language (SBML)

    Systems Biology Markup Language (SBML)

    A file format for exchanging computational models in systems biology

    The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.
    Downloads: 5 This Week
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  • 14
    GATE
    NOTE THAT THE SOURCE CODE AND ISSUE TRACKER HAVE NOW MOVED TO GITHUB. FIND US AT https://github.com/GateNLP/ GATE (General Architecture for Text Engineering) is an architecture, framework and development environment for developing, evaluating and embedding Human Language Technology. See http://gate.ac.uk for full details.
    Downloads: 1 This Week
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  • 15

    rssfiz

    Java science library.

    Java science library. Project contains modules for physics units, particle and quantum physics, molecule, chemistry and universe definitions, also additional math classes.
    Downloads: 0 This Week
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  • 16
    ASALI

    ASALI

    ASALI is an open-source code for chemical engineers

    Do you work with chemical reactors? Are you curious about them? ASALI is the open-source code that you are looking for. Chemical reactor models, transport/thermodynamic properties of gases, equilibrium calculations. ASALI couples all these features with an user friendly graphical interface. Modeling chemical reactors has never been so easy.
    Downloads: 8 This Week
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  • 17
    Dependency Finder
    Extracts dependencies and OO metrics from Java class files produced by most Java compilers. Computes API differences between versions. No source needed. Includes both Swing and command-line interfaces, with XSL stylesheets for formatting output.
    Downloads: 0 This Week
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  • 18
    Ultrashort Pulse Propagator

    Ultrashort Pulse Propagator

    A powerful simulation for designing femtosecond lasers and amplifiers.

    This is a simulation package developed for numerical simulation of ultrashort pulse propagation in optical media and pulse generation from mode-locked lasers. Although the code is primarily intended for investigations of fiber links, fiber amplifiers and fiber lasers, it can be applied to any other setting for which the governing equiations are valid. The physics included in the code is based on a generalized nonlinear Schrödinger equation, including higher order dispersion, stimulated Raman...
    Downloads: 2 This Week
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  • 19

    Dynamics Explorer

    Dynamical systems research tool

    Dynamics Explorer, (detool for short), is a program designed to let users explore dynamical systems, particularly focused on enabling mathematicians to improve the efficiency and quality of their research in the field of complex dynamics.
    Downloads: 0 This Week
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  • 20
    Java application for virtual tool shop simulation. Application allows simulation of exchange jobs between some tool shops. Jobs are grouped in projects and are organized in Petri nets (sequences of activities and stores).
    Downloads: 0 This Week
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  • 21
    IP-XACT 2009/2014  Platform

    IP-XACT 2009/2014 Platform

    Smart GUI/Commandline tools to create IP-XACT( 2009/2014) files

    Smart GUI to create or update IP-XACT often needed for the IP packaging. It has capability create Bus Definitions from scratch to populate BusDef library. One can create IP-XACT Component, Design or Registers by importing Ip in System Verilog/Verilog-95/VHDL, instantiate Bus Interfaces with proper port maps and attributes as needed. Smart GUI to create IP-XACT Registers, Memory Maps, Address Blocks for IP- has feature to import XLS or Verilog . It has Tcl/Python API...
    Downloads: 1 This Week
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  • 22

    xpressionparser

    parser of string expressions like sin(pi/4), functions x0+2*sin(pi*x)

    Expression parser of strings like sin(pi/4) is written in c++, javascript, java and php. It is also possible to create functions x0+2*sin(pi*x1) for further calculations.
    Downloads: 0 This Week
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  • 23

    TabuVis

    An Interactive Visualisation for Tabular Data

    TabuVis is a comprehensive visual analysis tool that provides a flexible, customizable and interactive visualization for tabular (or multidimensional) data. It utilizes scatter-plot visualization approach to provide comprehensive and interactive views for different attribute mappings. It provides single scatter-plot and multiple scatter-plots together with Map (GIS) capability. The project is available at: http://staff.scem.uws.edu.au/~vinh/projects/TabuVis/ Related...
    Downloads: 0 This Week
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  • 24
    MRCube

    MRCube

    Meta-Model Management based on RDFs Revision Reflection

    MRCube is a graphical editing tool of RDF-based contents developed for managing a relationship between RDF and RDFS contents.
    Downloads: 0 This Week
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  • 25
    java symbolic computing library and math editor, with : polynomial system solving, vectors & matrices, factorization, derivatives, integrals (rational functions), boolean algebra, simplification, MathML output, java code generation, geometric algebra
    Downloads: 0 This Week
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