Search Results for "data structure project in java" - Page 5
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Showing 352 open source projects for "data structure project in java"
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GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded. This project has moved to GitHub: https://github.com/GenomeView/genomeview
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CPS Wildfire Management Tool
A wildfire decision support system and visualization tool from Emxsys.
The Wildfire Management Tool (WMT) predicts the potential fire behavior of a wildland fire. WMT incorporates a 3D terrain viewer, the tenets of the Campbell Prediction System (CPS) and the Rothermel fire spread equations to depict fire behavior. WMT is used to adjust tactics & strategies to ensure the safety of firefighters and the effective use of firefighting resources. Requires Java 8 (included) - http://www.java.com/download -
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SCaVis
Scientific Computation and Visualization Environment
SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations... -
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glSatellite Demo
Technological demo of OpenGL ES 2 Android NDK
Technological demo of OpenGL ES 2 for Android platform. It reads public NORAD satellite database and shows the satellite positions and altitude related to Earth in the form of beams (the height of the beam represents the relative altitude). NOTE: The project has been moved to GitHub: https://github.com/nuald/glSatellite-Demo The old one stays here just for the historical reasons. The 3D features present: - OpenGL ES 2; - rotating, multi-touch zooming and moving the globe; - stars... -
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ProC 3.0
smart Workflow Engine
ProC 3.0 is a scientific workflow engine to build, manage and execute workflows (pipelines) in heterogeneous environments, supporting GRID and other means of parallel processing. It includes a data management component (DMC) to transparently access databases for storage of results and automatically adds metadata to track the processing of data products, so that at every time a full processing history is available. The software was developed and used within the ESA Planck satellite mission. -
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Immutable Sparse Wave Trees (WaveTree)
Realtime bigdata tool for bit strings up to 2^63 based on AVL forest
Realtime bigdata tool at the bit level based on immutable AVL forest which can be run in memory or, in future versions, as a merkle forest like a blockchain. Main object is a sparse bit string (Bits) that efficiently scales up to 2^63 bits normally compressed as forest has duplicated substrings. Bits objects support reading bit, byte, short, int, or long (Java primitives) at any bit index in 64 bit range. Example: instead of building a class to hold a header and then data, represent all... -
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Chordalysis
Log-linear analysis (data modelling) for high-dimensional data
..., also known as chordal graphs. Chordalysis makes it possible to discover the structure of datasets with thousands of variables on a standard desktop computer. Associated papers at ICDM 2013, ICDM 2014 and SDM 2015 can be found at http://www.francois-petitjean.com/Research/ YourKit is supporting Chordalysis open source project with its full-featured Java Profiler. YourKit is the creator of innovative and intelligent tools for profiling Java and .NET applications. http://www.yourkit.com -
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The aim of the cardiac atlas project is to establish a structural and functional atlas of the heart. This project is funded by the NIH grant and led by the University of Auckland, New Zealand.
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Java based astronomical logging software which stores it's data in a free and open XML based format (OpenAstronomyLog). Discontinued project: Please check out the fork: https://github.com/capape/observation-manager for an updated version
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VSViewer3D
3D Virtual Screening Viewer
This project is an interactive viewer for 3D virtual screening data. -
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LGML
LGPL GML parser
LGML is a GML parser under the LGPL license. The aim is to parse a GML document or fragment in order to get a WKT output. 2D and 3D inputs are both handled, but it is not permitted to have mixed geometries. The caller can choose if the input coordinates are parsed as X, Y, Z (if present) order, or Y, X, Z (if present) order. The willing of the project is to be a starting point useful for developers that need to parse GML objects in order to use them, for example, in the context of OGC... -
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adLIMS
adLIMS: a Laboratory Information Management System with ADempiere
... into the genome of target cells. We process around 1500 samples/year resulting in hundreds of millions of sequencing reads, requiring automation and posing new challenges in data storage, monitoring of sample process and computational tools for analyses. Thus we need to standardize data management and tracking systems, built on a scalable, flexible structure with an easily accessible and web based interface, what is usually called Laboratory Information Management System (LIMS). -
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The Bio2RDF project aims to transforms silos of life science data into a globally distributed network of linked data for biological knowledge discovery. Bio2RDF creates and provides machine understandable descriptions of biological entities using the RDF/RDFS/OWL Semantic Web languages. Using both syntactic and semantic data integration techniques, Bio2RDF seamlessly integrates diverse biological data and enables powerful new SPARQL-based services across its globally distributed knowledge bases.
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Coulson Plot Generator
Graphics generator for pie diagram matrix from spreadsheets
For comparative plus/minus spreadsheet data, Coulson Plot Generator application creates a multiple pie diagram, for a rapid visual comparison of subunit occupancy across a range of entities. Numbers of pies, segments, labels and colours are customisable. Creates an editable PDF from a comma separated text file. Now with zoom capability and more memory, for larger datasets. Save images in several formats including SVG. -
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Deem
Analyze time-course data with significance tests, clustering, modeling
Use statistical methods to analyze time-course data (gene expression microarray and RNA-seq data in particular, but not limited to). Apply significance tests to filter out only significant genes or time series. Cluster time series into similar groups. Generate network models, including linear or non-linear models. Variable selection and optimization routines included. Written in Scala and R. The application is a cross-platform desktop app with a simple GUI and is fully functional... -
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A project to host code developed for the Microtransat challenge, a race between autonomous sailing robots. This project is intended for both supporting code such as tracking systems and robot control systems or parts of robot control systems.
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Energistics Transfer Protocol
Real-time Low Latency High-Frequency data streaming API
This project contains the working artifacts for the development of the Energistics Transfer Protocol. There is NO Wiki. To review documentation, clone or download the repository and look in the documentation directory. You can access on line using the [Browse Code] button. -
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GeoGit
Geospatial Distributed Version Control System
NOTE: this project has been renamed as GeoGig. Use this URL to get to the GeoGig downloads: https://sourceforge.net/p/geogig Welcome to the GeoGit project, exploring the use of distributed management of spatial data. GeoGit draws inspiration from Git, but adapts its core concepts to handle versioning of geospatial data. Users are able to import raw geospatial data (currently from Shapefiles, PostGIS or SpatiaLite) in to a repository where every change to the data is tracked. These changes... -
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A Java toolkit for the creation of physics simulations and 3D visualizations. Developed as part of the Technology Enabled Active Learning (TEAL) initiative at MIT.
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Athus
Manage, merge, filter and convert population genetics data
This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps. Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ... In addition there are several utilities for * generating VCF from SNPArray data (NCBI - GEO, Illumina... -
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Graph-RAT is a database abstraction layer designed to make it easy to use a large library of graph-analysis routines on a database as well as add new kinds of algorithms to data mining.
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TriageTools
Tools for partitioning and prioritizing fastq data
TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets. The project wiki contains usage information. -
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TreeBASE is a database and web front end that stores phylogenetic trees and the data matrices used to generate them. The current iteration comprises a complete rewrite of the schema and web layer, and will include a web services layer.
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ActiveFolder
ActiveFolder can be integrated with existed scientific computation.
Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification. -
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A math application written in Java. Its features include 2D and 3D graph plotting, scripting, user-defined variables and functions and skinnable GUI. This project is not maintained at the moment.
