Showing 1244 open source projects for "alpha linux"

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  • 1
    This java program will ultimately solve grid-type logic problems if given enough clues in a pseudo english language. Features a user friendly GUI letting the user know the progression of the solving process based on the clues entered.
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  • 2
    ChannelFinder Directory Service
    Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
    Downloads: 0 This Week
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  • 3
    CRAFT HPC Floating-point Analysis

    CRAFT HPC Floating-point Analysis

    CRAFT: Configurable Runtime Analysis for Floating-point Tuning

    CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft
    Downloads: 0 This Week
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  • 4
    Collaborative infrastructure for Collaborative Product Development (manufacturing) within Extended and Virtual Enterprise.
    Downloads: 0 This Week
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  • 5
    Micro-agents
    An efficient Java-based Multi-agent Platform implementing the micro-agent concept µ² offering network support and multiple agent implementation languages. Detailed instructions and documentation can be found under http://www.micro-agents.net. This project has been moved to Github.
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  • 6

    kovacs.util (Java numerical classes)

    !!! moved to jnum subproject under crush-software !!!

    This project has be renamed to jnum and moved under the crush-software project. No further SVN commits here...
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  • 7

    Sequencia

    Protein Primary Sequnece Analysis

    The current work is focused on the Software Development of an Offline Tool for “PRIMARY-SEQUENCE ANALYSIS” with JAVA and open source resources. SEQUENCIA Tool is an offline Tool of Primary Sequence Analysis, which is quite prevalent Topic for Researchers all over the world. Sequence Name, Sequence Length, Absorbance, Net charge, Iso electric charge, Amino acid composition, Amino acid classification, Aliphatic Index, Instability Index, Average Hydropathy etc are the Primary Sequence Analysis...
    Downloads: 0 This Week
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  • 8
    The Java Data Mining Package (JDMP) is a library that provides methods for analyzing data with the help of machine learning algorithms (e.g. clustering, classification, graphical models, neural networks, Bayesian networks, text processing, optimization).
    Downloads: 1 This Week
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  • 9
    safecap

    safecap

    Safecap Platform for improving railway capacity via formal modelling

    The overall aim of the SafeCap project is to develop modelling techniques and tools for improving railway capacity while ensuring that safety standards are maintained. Useful links: Project homepage: http://http://safecap.co.uk/
    Downloads: 0 This Week
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  • 10
    Krowdix
    Krowface (Krowdix 3.0) is a simulation and implementation tool of social networks. To visualize and analyze the evolution of different social networks in real time. And the creation of a social network, configuring the parameters that define it. All this through a simple web interface and user friendly.
    Downloads: 0 This Week
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  • 11
    Virmid

    Virmid

    Virtual Microdissection for SNP calling

    NEWS: 11-07-2013 A new version Virmid 1.1.0 has been uploaded. 08-29-2013 Virmid paper is now published in Genome Biology. Kim S et al, "Virmid: accurate detection of somatic mutations with sample impurity inference", Genome Biology 2013, 14:R90 http://genomebiology.com/2013/14/8/R90/abstract Virmid (Virtual Microdissection for SNP calling) is a Java based variant caller designed for disease-control matched samples. Virmid is also specialized for identifying potential within...
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  • 12

    ConvertMAS

    ConvertMAS converts Chemical File Formats mol, mol2 and sdf.

    ConvertMAS - molecule converter; use to convert Chemical File Formats. It works on mol, mol2 and sdf files. It converts single file to respective formats. It will split sdf file with multiple molecules into seperate single files of any desired format. Also ConvertMAS creates sdf files from joining of mol, mol2 and sdf files. This is stand alone application; hence no need of internet connectivity to get results. It will generate output files in less time. Various online tools are available...
    Downloads: 0 This Week
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  • 13

    xorlisp

    Bit level lambda continuations and nothing else - Queue automata

    Not working yet. To deal with the Halting Problem, computing and data are navigated using debugger ops: linearForward and treeForward, which navigate an astronomically large bit string where 1 is ( and 0 is ). All pairs are derived from (). For example, true is represented as ((()())()), and false is (()(()())). It appears related to the church encoding of lambda where T chooses first parameter and F chooses second, of a pair. Continuations are nearly finished code and are represented as a...
    Downloads: 0 This Week
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  • 14
    MD PnP | OpenICE

    MD PnP | OpenICE

    Open Source Integrated Clinical Environment

    As of 2015-06-23, this project may now be found at http://www.github.com/mdpnp/mdpnp. A prototype reference implementation of the standard for the Integrated Clinical Environment (ASTM F2761-2009)
    Downloads: 1 This Week
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  • 15

    Usul

    Foundation bolt load for Pressure Vessel

    Downloads: 0 This Week
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  • 16
    zet-evacuation
    Moved to GitHub. This is the old, unmaintained source code. https://github.com/zet-evacuation A tool to model and simulate evacuation situations in buildings using flows on graphs and cellular automatons. It allows visualization of both models in OpenGL.
    Downloads: 0 This Week
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  • 17

    Drug Extraction

    Drug name extraction

    Drug name recognition and normalisation/grounding to DrugBank ids and standard names. Package provides 2 taggers: 1. DrugTagger - CRF-based with DrugBank presence feature (see feature set for details). 2. DrugnameGazetteer - gazetteer/dictionary-based. Dictionary created from DrugBank.ca database. Both taggers include grounding/normalisation to DrugBank ids and standard names. Feature set: Word, Word-1, Word+1, Word-1_Word, Word_Word+1, DrugBankPresence, POS DrugBankPresence...
    Downloads: 0 This Week
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  • 18
    JPOP is a pure java parallel optimization package based on the Optimization Java Package. It supports analytical gradients and Hessians for non-linear optimization. JPOP is based on uncmin in Fortran but employs java arrays and object oriented code.
    Downloads: 0 This Week
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  • 19
    SoftSmithy is a platform for open source Java developers. The core is an extended Java utility library. In the future there may be open source software build on this library.
    Downloads: 2 This Week
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  • 20
    MathOCR

    MathOCR

    A printed document recognition system that can deal with formula

    MathOCR try to recognize printed scientific document including mathematical formula , result is available in LaTeX and HTML.
    Downloads: 3 This Week
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  • 21
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated...
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  • 22
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  • 23
    Revolution Java Libraries

    Revolution Java Libraries

    Java libraries for creating applications

    Revolution Java libraries are downloadable .jar files used for creating applications. They are designed specifically for creating agent-based modelling applications. revolution.jar Contains the basic classes need to create an application. revolution-apps.jar Extends revolution.jar with a number of in-built application templates.
    Downloads: 0 This Week
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  • 24

    gametes

    Generate complex SNP models and heterogeneous datasets

    Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. User friendly GAMETES software...
    Downloads: 4 This Week
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  • 25
    CellCompiler
    The target system of this project is to develop mathematically efficient program code generator from cellml like biological models described by mathematical markup languages.
    Downloads: 2 This Week
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