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This is a pipeline that is used to store an EST or Genome assembly information including reads and their alignment in a mysql database. Further more, it provides a set of scripts to mine SNPs and other statistics from the assembly.
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Java ILP is a simple java interface to (mixed) integer linear programming solvers such as lp_solve, Glpk, Gurobi, SAT4J (0-1 ILP), MiniSat+(0-1 ILP), CPLEX, or Mosek. (documentation at http://javailp.sourceforge.net/)
This is an IDE for 8051 which can be used to write and simulate assembly language program and find out errors if any. The project implements almost all 8051 functions. It visually shows the content of all register and memory.
LoroDux is planned to be a OSM and Java based multi platform navigation software for mobile devices for blind and visually impaired persons. Release of first alpha version was September 10, 2010. http://wiki.openstreetmap.org/wiki/LoroDux
OpenAstrology is Java based Object-orientated implementation of Astrology. OpenAstrology will provide a platfrom to plug-in in the knowledge of Astrology and the derived solution will be the best real time Astrology solution
This software simulates cellular behavior based on specific rules (e.g. Game of Life or Wireworld). The UI will be replaceable and there will be a feature for importing rules from a file based on a format developed for this purpose.
The application for tracking a mobile devices, similar to google mobile maps but enhanced about many additional new features including a web service where
a user will be able to track registered mobile devices from a web browser.
PhyloSort sorts phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units.
swIMP (swig-based Interfaces for Mathematical Programming) provides Java wrappers for solvers written in C or C++. The current focus is on accessing OSI-compatible linear programming (LP) solvers from the Coin-OR-project (e.g. Clp, GLPK, MOSEK, CPLEX).
HATS (Haplotype Amplification in Tumor Sequences) is a tool that calls the amplified alleles, and thus amplified haplotype, in copy number aberration regions in next generation sequencing tumor data. The amplified haplotype may reveal gene variants.
Tifad is a framework to deal with Natural Gas (NG) dispatching for thermoelectrical generation networks. Project blog can be browsed here: https://tifadframework.wordpress.com/
A program to calculate and create lists of possible variations (permutations) and selections (combinations) of a given set of elements. Creating the cartesian product of two sets is also possible.
TMAJ is software for Tissue MicroArrays (TMA's). Patients, specimens, blocks, slides, cores, images, and scores can all be stored and viewed. Features include advanced security, custom dynamic fields, and an image analysis program.
Java based multi-agent platform built on an organizational model (agent, group, role). MadKit provides general agent facilities (lifecycle management, message passing, distribution, ...), and allows high heterogeneity in agents.