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Java-based number generator package. Includes several strategies, apart from the usual random: constant, serial, function, composite.
Besides, generators can be wrapped in different filters to obtain modified data series.
Projeny (Probablistic Networks Generator in Java) is a graphical (Java SWT) front-end to BNT (Bayes Net Toolbox for Matlab). Projeny requires BNT, JMatLink and a Matlab back-end. There is no installable release package, but source code is available on SVN - please check out from SVN to use Projeny. Projeny was started with BNJ as the base.
A small java API library for running the MM3 molecular mechanics package from within a java environment. It does not include MM3, nor implement MM3. The MM3 binaries have to be available on the user system.
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Growing out of an initiative on the YBW forums this initial project aims to develop a workable open source autopilot control package. The intention is to expand this into an open source initiative to support general onboard marine instrumentation.
JSwarn is a particle swarm optimization (PSO) package written in Java. Designed to require minimum effort to use (out of the box) while also highly modular.
JMulTiR is an econometrics package designed for univariate and multivariate time series analysis. The numerical computations and graphics are done in R (www.r-project.org), the GUI is programmed in Java Swing with the jstatcom framework.
jSim for Gromacs is a Graphical User Interface for the Molecular Dynamics Package Gromacs. It has a project style interface to organize your md simulations. It is also possible to start md simulations on remote computers with ssh.
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Carbon Effective Supply Chain Simulator (CESCS) is a software package for simulating green supply chain. A unique approach is taken to help achieve the optimal balance between carbon footprint, supply chain cost, service level, and product quality.
Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.
This package allows you to create virtual rubik cubes and move their faces. Moreover you can see at every time the current position of the cube and find its solution. Visit http://www.hcroboting.com for more information
A bioinformatics package to analyse ESTs (Expressed Sequence Tags) easily. It contains functionalities of ESTs for EST submission, Batch BLAST and BLAST result parser, etc. easiEST contains JAVA GUI applications for analysing ESTs or other sequences
This package has been created in order to control, solve and manage a 2x2
rubik cube using java language. Its methods can mix and solve the cube, and allow
the user to change the cube information in any time. There are two ways to solve the cube.
The goal of the GeneText project is the development of a software package that will enable users to dynamically generate an information summary page from multiple sources given a search term. Fields of interest are biology, genetics and bioinformatics.
UDA stands for Universal Descriptive Algebra. It consists of a Java package handling universal algebras and relational structures as description systems.
ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences
The ExactFDR software package is an improvement of
permutation-based False Discovery Rate (FDR) estimation methods
that takes advantage from exact p-value computations for analyzing Genome-wide association studies data
STRStat is a statistical package to calculate various parameters used in forensic science. It is also able to graphically display the distribution of the population and calculate the probability of appearance for a specific phenotype.
NOTE: The IntAct package is now hosted at google code: http://intact.googlecode.com IntAct is an open source package to store and manipulate molecular interaction data.
JMatrixCalc is a Java package used for matrix calculations. It's aim is to make developing many scientific (and non-scientific as well) project much easier and quicker. These projects include: educational software, statistics and many others.
ReactionLab is a software package aimed for a unified computer environment to kinetic modeling of chemical reaction systems. The present implementation is founded on Matlab and Java-Swing GUI, with an interface to legacy C (and Fortran) codes.
A plugin for segmentation and analysis of images of vascular networks.
A plugin package for ImageJ that assists with quantification and characterization of vascular networks. The tool regularizes lighting, segments the vessels, and generates a skeletal description that reflects the biological structures of interest.