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Geoplan-Geospace is a 2D and 3D interactive geometry software to create and manipulate interactive figures for eLearning. It features euclidean geometry objects (lines, circles), numerical functions, numerical sequences, geometrical transformations.
ARTADE (ARabidopsis Tiling-Array-based Detection of Exons) is a standard tool for the automatic annotation of genome-wide tiling-array data in Arabidopsis. ARTADE is a program originally written by Dr. Tetsuro Toyoda, RIKEN, Japan.
JIPL (Java Image Processing Library) is an attempt to provide an efficient way to load, filter, manipulate, and save images. The goal is to provide an intuitive and extensible library.
This is a visual pipeline framework for batch processing data. It is a plugin to Eclipse Platform. It is a general framework designed to be customized for specific field. One example is http://sf.net/projects/camba
This Project moved to https://sourceforge.net/projects/synbiowave/ because the name GeneWave is a registered trademark... Please do not use this project anymore.
Migratool is a software tool, which aims to easy the geospatial (and non-geospatial) data migration among both distributed and heterogeneous data sources. This tool is based on a three tiers architecture and it has been implemented using the J2EE archite
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JSwarn is a particle swarm optimization (PSO) package written in Java. Designed to require minimum effort to use (out of the box) while also highly modular.
The Unified Search Framework is an HPC tool for conducting search optimization and experiment design on High Performance Computing platforms. USF has been designed for platforms containing thousands of processors, and tested to 10,000 CPU cores.
HicCalc is a scientific utility written in Java,that runs on all java supported operating systems. The current release contains the graphing part of the product. Please visit http://www.hicsys.com/hiccalc.htm to check out the online demo.
RepeatMap is a collection of time/memory efficient algorithms and data structures to enable rapid counting & querying of kmers (sequences of length k) counts in large sequences. E.g. a query could be "how many times is 'ACGTCATGGTAC' found in a genome."
This project is an easy to use Java application framework, providing enough functionalities to be fully usable. It has been developed for a scientific articles library software, but I hope it's sufficiently generic to be usable on different contexts.
Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume
QASE is a Java-based API designed to provide all the functionality needed to create game agents in Quake 2. Powerful enough to facilitate high-end research, it is also suitable for undergrad courses geared towards classic AI and agent-based systems.
Shape is a molecular conformation prediction program. It uses a genetic algorithm to efficiently search the conformational space of a biomolecule and then clusters the results. It is very simple to use.
The OpenNLP Interlinear Glossed Text (IGT) Editor software supports transcriptions and interlinear glosses for language documentation with semi-automated annotation.
Artificial chemistry low-level simulation : make up our own rules of construction to simulate open-ended, creative evolution. See http://organicbuilder.sourceforge.net/ for more information.
ViSoR provides a visualization of several social indicators, statistics and crimes for the Ruhr Area in Germany. It allows users to view and compare particular suburbs or regions in this area.