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KADis is a software architecture reconstruction utility, which uitilizes the Knowledge Discovery Meta-Model of the OMG. It uses source nagivator NG for parsing the architecture and enables saving the architecture as an XML file.
As the famous singer, CALLAS moves emotional and natural interaction into New Media. Its plug-in multimodal Framework allows easy and fast development of Art & Entertainment applications, involving users as active spectators of artistic performances.
PhenoFam is a web-based application that performs gene set enrichment analysis (GSEA) by employing structural and functional information on families of protein domains as annotation terms.
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Gridnexus provides an easy-to-use graphical interface for collaborating Web Services, Grid (WSRF) Services, local applications, and other operators together in a way that is accessible to a wide-range of applications and users.
PhyloPattern is a Java/Prolog API, helpful to simulate human reading of phylogenetic trees. Bioinformatician can: annotate trees, apply complex patterns to a tree to search specific architectures or extract information, compare trees with dynamically gen
jamod is an object oriented implementation of the Modbus protocol, realized 100% in Java. It allows to quickly realize master and slave applications in various transport flavors (IP and serial).
Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments.
GRad is a standalone solar radiation model, programmed in Java. It is capable of the calculation of potential (clear sky) and actual (real sky) irradiance and total irradiation for single and multiple geographical locations.
Note that, while fully functional, this application is currently not developed any further.
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
The Receipt Reactive Gross Settlement (RRGS) method was proposed by Jamie McAndrews in Johnson-McAndrews and Soramaki (2004). This simulator allows simulations of one version of RRGS with historical payment data.
Taverna is *no longer* hosted on SourceForge, but has moved to the Apache Software Foundation: https://taverna.apache.org
These pages and mailing list archives are provided for *archival purposes* for older Taverna 1.x releases.
See https://taverna.apache.org/download/ for the latest releases from Apache Taverna.
AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general.
AnnaF was build upon the pipeline framework Anna.
* Java classes for parsing text, conversion to XML or to evaluate in Java. The parser is textual-script-controlled with a syntax near Backus Naur Format, named ZBNF. * Some routines for conversion: C-Header or Java to XMI, XML-Documentation generation,
Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates...
JPARSEC is a Java Package of Astronomical Resources for Standard Ephemerides Calculations, focused on accuracy, documentation, 2D/3D charts, realistic planetary rendering, and Astrophysical modeling. For source code visit http://conga.oan.es/~alonso/
OmicBrowse, developed with Flash and Java, is a highly evaluated genome browser integrating omics knowledge ranging from genomes to phenomes and is especially appropriate for positional-cloning purposes.
Open extensible system analysis report tool for Java, based on numerous open source analysis initiatives. The XML/XSL batch-processing framework produces integrated HTML/SVG reports of the systems current state and the development over time.
Maximally flat (maxflat) digital filter design in Java, with arbitrary numbers of poles and zeros. "Maximally flat" means that the magnitude frequency response has the maximum number of vanishing derivatives at 0 and pi.
This is a simple program that will factor a quadratic trinomial using both "guess-and-check" and the quadratic formula. You input a, b, and c, where ax^2+bx+c=0; you will get a result in the form of (ax+b)(cx+d)=0 and x=a or x=b.