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PulsarHunter is a java based package for pulsar searching. It operates on a number of standard data formats. This package also includes the JReaper graphical candidate selection tool.
Sanchay is a collection of tools and APIs for language researchers. It has some implementations of NLP algorithms, some flexible APIs, several user friendly annotation interfaces and Sanchay Query Language for language resources.
DimReduction project provide an open-source multiplatform (Java) graphical environment for bioinformatics problems that supports many feature selection algorithms, pattern recognition techniques, criterion functions and graphic visualization tools.
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A java tool for anytime and interactive sequence mining. Aims at providing users with a way of analyzing her activity traces and extract activity schemes from them.
"Java Textual Desktop" project stands for the classical TEXT screen with java implementation inspired with Curcus which used for decades in the history of UNIX (linux).
cy2reposition: Cytoscape 2 plugin for layout reuse
CyReposition is an open source Cytoscape Plugin for the reuse of existing Cytoscape network layouts in new Cytoscape projects.
This project migrated to github
https://github.com/matthiaskoenig/cy2reposition
PhenoFam is a web-based application that performs gene set enrichment analysis (GSEA) by employing structural and functional information on families of protein domains as annotation terms.
Fuzzy logic add-in for OpenOffice.org Calc. InrecoLAN FuzzyMath allows to perform ordinary arithmetic operations and use ordinary mathematical and financial functions with fuzzy numbers. Have any ideas how to improve this project - you are welcome!
Currently, all existing formal tools are designed to serve as formal verifiers, using one implementation or another. JTLV is a new tool aimed to facilitate and provide a unified framework to the development of formal verification algorithms.
PhyloPattern is a Java/Prolog API, helpful to simulate human reading of phylogenetic trees. Bioinformatician can: annotate trees, apply complex patterns to a tree to search specific architectures or extract information, compare trees with dynamically gen
To help math students visualize the prufer code and/or discover anything new about the prufer code not already present. Examples and live applet on webiste.
Seems to be closely related to Cellular automaton, except this creates a complex pattern from a mathematical function you input. See website for examples/live applets. This program makes use of an old GPL version of the JEP equation parser.
Program described in the paper: MUDE: A new approach for optimizing sensitivity in the target-decoy
search strategy for large-scale peptide/protein identification, 2010.
By Cerqueira, Fabio; Graber, Armin; Schwikowski, Benno; Baumgartner, Christian.
A graphical MatLab framework for estimating the parameters of, modeling and simulating static and dynamic linear and polynomial systems in the errors-in-variables context with the intent of comparing various estimation strategies.
Blogspread is an open platform for the developmend of applications that analyze data from websites like blogs and forums. Blogspread is jointly developed by the University of Mannheim, Germany, the UFPE, Recife, Brasil and the UFAL, Maceio, Brasil.
UbikSim is an infrastructure to study complex AmI (Ambient Intelligence) applications which involve a large number of users. It is a MABS (multi-agent based simulation) programmed in MASON and aims to be as descriptive as possible.
HealthAgents is an open source web-based distributed decision support system (DSS)
which provides hospitals and organisations with a reliable tool to aid in the diagnosis of brain tumours and their prognosis aiming to avoid invasive surgical
procedures