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Rolling your own OAuth token storage can be a security liability. Token Vault securely stores access and refresh tokens from federated providers and handles exchange and renewal automatically. Connected accounts, refresh exchange, and privileged worker flows included.
Example-based Modeling (EMO) is an tool to create data models, with examples, using a web interface. You interactively create a web-accessible database of models and samples for those models. A white paper describes the underlying assumptions.
Trial Criteria Online Data Entry (trialCODE): a Java-based user interface that codifies eligibility requirements used to automate the screening of potential subjects to clinical trials. Used for caMATCH screening engine on BreastCancerTrials.org site.
SPIDR (Space Physics Interactive Data Resource) is a distributed database and application server network, built to select, visualize and model historical space weather data. SPIDR is a web-application and a grid of data mining web-services.
A software to store, (PUT) meteorological data from complex free form text format to databases and and GET stored (and already loaded) data from databases using OPeNDAP protocol. Written using Java6, XSD, and C++. It support OPeNDAP clients thanks to
A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.
Open data mining platform. Provides common architecture for algorithms of various types. Efficient processing of arbitrarily large volumes of data thanks to data streaming. Weka and Rseslib partially integrated. (www.debellor.org)
Tsunami is an open-source high performance computing language. With it you can write streaming data-parallel algorithms that utilize GPGPUs for orders-of-magnitude speed-up with the ease of writing sequential algorithms.
...It supports command line use on both Windows and Unix as well as use directly as a Java library. Written by CSIRO Australia and funded by the ANDS Australian Research Data Commons Project
A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
A java interface to the open source LabRAD framework for distributed instrument control and data acquisition. JLabRAD facilitates rapid development of client/server LabRAD applications.
Plexus is a Java library with specifications and implementations for generic graph data structures. Like the Java Collections Framework, vertices and edges are containers for arbitrary user-defined objects.
The development and curation of a range of XML-based tools
for using Chemical Markup Language (CML), including
XSD XML Schemas for validation, datatyping and constraining CML
documents and XSLT Stylesheets for transforming, filtering and rendering.
Cyberinfrastructure Shell (CIShell) is an open source, community-driven framework/application for the integration and utilization of datasets, algorithms, tools, and computing resources. Algorithms can be integrated using most programming languages.
Memomics Forge is a meta-project for software that utilizes the Memomics Semantic Service.
Memomics Semantic Service provides semantic data which can be embedded in applications via webservices.
Anna is lightweight Java framework to build pipeline systems of any kind.
It will take care of recurrent needs such as dependency management, data serialisation and synchronization as well as parallelization of execution.
OpenClinica is a web-based electronic data capture platform for clinical research. See http://www.OpenClinica.org/ for downloads, documentation, and mailing lists.
The purpose of this project is to develop ontology-based tools for the study of animal behavior (ethology). The goal is not to produce a general ontology or editor, but comparative methods
and (behavior) data entry tools (ethontos and owlwatcher).
ClimateTrends is an information and analysis tool on global climate change developed by the World Resources Institute. ClimateTrends provides a comprehensive and comparable database of greenhouse gas emissions data.