Search Results for "data collection algorithm" - Page 3
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Showing 98 open source projects for "data collection algorithm"
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CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.
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GISpatialNet is a Java-based tool for mapping network data (nodes and edges between them) to spatial coordinates; reformatting network and spatial data together; and calculating spatial network measures. Install by saving to c:\ drive and typing the following in a command line: java -jar c:\GISpatialNet-0.9b.jar
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DevLogger is a software framework used to collect, monitor, and log data from any number of instruments or input devices simultaneously. Initial support provides for serial connections to Radio Shack 22-812 multimeters and My Weigh HD Scales.
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CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74
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This project is to develop web applications and data integration functions to provide information on the collection records, ecology, geographic distribution, and taxonomic concepts of the vascular flora of the region.
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A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
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The SeismoWeb Toolbox is a collection of Matlab and Java tools providing access to seismological webservices. The current focus lies on the NERIES earthquake data portal, but it is intended to add more webservices in the future.
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SPASE Model is a collection of tools for working with the structured data model information. Tools can convert the relational version of the data model into various expressions, including XSD, XMI and PDF documentation.
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CEGA is a highly extendable layout plugin for Cytoscape based on an Evolutionary Algorithm. In contrast to other layout algorithms, CEGA lets users decide which features are important for the visualization of their graphs.
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The SPASE Registry Services is a metadata sharing system for Virtual Observatories. It is a collection of servlets that utilize SPASE compliant resource descriptions to provide access to both the metadata and data.
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Sanchay is a collection of tools and APIs for language researchers. It has some implementations of NLP algorithms, some flexible APIs, several user friendly annotation interfaces and Sanchay Query Language for language resources.
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This is a reference implementation of snoBAC, a Bayesian Classifier designed to predict box H/ACA snoRNAs in Caenorhabditis nematode genomes. For details of algorithm and data, see Wang and Ruvinsky (2009) RNA in press.
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AlViz is a research prototype for visual ontology alignment implemented as multiple-view plug-in for Protege using J-Trees and Graphs. Based on similarity measures of an ontology matching algorithm AlViz helps to assess and optimize the alignment results
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RepeatMap is a collection of time/memory efficient algorithms and data structures to enable rapid counting & querying of kmers (sequences of length k) counts in large sequences. E.g. a query could be "how many times is 'ACGTCATGGTAC' found in a genome."
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A collection of applets used to demonstrate physics and math principles. The applets include: a ray diagram drawing applet, a collision of disks applet, an electromagnetic field mapper and a 3d hydrogen orbital simulation.
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Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.
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DiscriAlign implements a novel algorithm that aligns a set of biological interaction networks.It identifies both functionally conserved and dissimilar regions.
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The EventStream Experimenter Workbench is a data collection framework with integrated visualization techniques to facilitate eye tracking research. The software currently supports the ASL eye trackers.
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The aim of the project is to provide open source collection of algorithms in the field of spectroscopy: data handling and processing, modeling and artificial intelligence tools.
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The CheckCML project is a collection of modules for the production and checking of chemical experimental data represented as CML. The core CheckCML library provides classes for the checking process; tools such as OscarData allow for the production of CML
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Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.
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Trauma registry suite; Data collection application and server scripts to build trauma data warehouse and perform web-based analysis reporting. Cross-platform compatible for Windows, Apple, Unix, or Linux.
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The Patient and Sample System for Information Management (PASSIM) is a system for annotation and storage of data, associated with the collection of samples in biomedical studies.
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A collection of novel phylogenetics algorithms that assists biologists, geneticists, and bioinformaticians in the analysis and interpretation of phylogenetic data.
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Simple Java Graph is a minimal matrix- and listbased graph implementation. An AStar search algorithm is also available.
