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The Vyper Dynamic Server framework is a pure-java library for use in the creation of backend / server platforms. VDS is specifically tailored for financial applications, and suited for many high-throughput, asynchronous and distributed environments.
This is an open-source project of options-calculator.com The objective of the project is to create a tool in Java that allows visual and easy simulation/development of options-based investment strategies. I am looking for support and members.
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jSim for Gromacs is a Graphical User Interface for the Molecular Dynamics Package Gromacs. It has a project style interface to organize your md simulations. It is also possible to start md simulations on remote computers with ssh.
JMulTiR is an econometrics package designed for univariate and multivariate time series analysis. The numerical computations and graphics are done in R (www.r-project.org), the GUI is programmed in Java Swing with the jstatcom framework.
Mirth Connect is an open source cross-platform HL7 interface engine that enables bi-directional sending of HL7 messages between systems and applications over multiple transports.
cismap is a Java based client for OGC Web Mapping Services (WMS, WFS, ...). It provides a browser oriented user interface with features like history, bookmarks. unlike web technology based clients it provides a very powerfull an comfortable user interfac
The goal of this fractal renderer is to enable intricate images to be created with maximum control over the results. To this end, it supports multiple layers, many fractal types (including user – defined equations) and different ways of rendering.
Jather aims to provide an easy to use library for clustered process execution in Java. This library aims to provide a simple API and allow applications to add clustering functionality with little change to the existing code.
DeHinter is an enhanced file-sharing client that exploits the topology of the spontaneous communities of like-minded people to enable personalized social filtering techniques. The P2P layer is based on the Limewire Gnutella client.
Tipa2Unicode is a little stand-alone application which lets you input Tipa-shortcuts and then displays Unicode symbols. You can then paste either side of the conversion to LaTeX or a word processor.
DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
Shape is a molecular conformation prediction program. It uses a genetic algorithm to efficiently search the conformational space of a biomolecule and then clusters the results. It is very simple to use.
Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume
MIDlet showing status of GPS device connected to cellphone. Show availability of GPS device/signal, current position, speed, course and satellites' position and signal power. Log tracks in GPX format.
JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.
ViSoR provides a visualization of several social indicators, statistics and crimes for the Ruhr Area in Germany. It allows users to view and compare particular suburbs or regions in this area.
Now part of Apache's Mahout machine learning project at http://mahout.apache.org/-- please see there for latest info and code and releases and support!
Utility to translate "dvorcodes" (Dvorak keycap-encoded phrases) into their actual key values. For instance the dvorcode for "password" is "laoo,rpe". Use this tool to discover your dvorcode passwords when you must enter them on a QWERTY keyboard.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
ScreeningAssistant is a software based on JOELib and dedicated to the management of chemical databases. It allows the user to select a set of compounds for screening tests (High Throughput Screening or Virtual Screening).
Planning Tool is a tool developed by QualDev Group (Universidad de los Andes, Bogota, Colombia) created to support the planning process and to track project's activities for all the projects worked in the group.