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Graph polynomials and view prime numbers on a ulam spiral graphing plot. Only integer numbers. Based on an old GPL version of the JEP equation parser. See website for additional examples/live applets Seems to be closely related to Cellular automaton.
Program described in the paper: MUDE: A new approach for optimizing sensitivity in the target-decoy
search strategy for large-scale peptide/protein identification, 2010.
By Cerqueira, Fabio; Graber, Armin; Schwikowski, Benno; Baumgartner, Christian.
NG4J - 'Named Graphs API for Jena' is an extension to the Jena Semantic Web framework for parsing, manipulating and serializing sets of Named Graphs. For details about Named Graphs see http://www.w3.org/2004/03/trix/
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Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments.
TaxonFinder is an application that annotates taxon found in literature. The application harnesses a hybrid algorithm that is necessarily a combination of morphological analysis, dictionary lookup and Levenstein Distance algorithm.
HealthAgents is an open source web-based distributed decision support system (DSS)
which provides hospitals and organisations with a reliable tool to aid in the diagnosis of brain tumours and their prognosis aiming to avoid invasive surgical
procedures
Maui is a multi-purpose automatic topic indexing algorithm. Given a document, Maui automatically identifies its topics. Depending on the task topics are tags, keywords, keyphrases, vocabulary terms, descriptors or Wikipedia titles.
OpenDMAP (Open Source Direct Memory Access Parser) is a natural language processing (text mining) application: a semantic parser for information extraction.
SLEDRIDE: Simplified Learning about Expression Data Running in a Desktop Environment. To provide a general workbench for pipe-lining microarray gene expression data from supervised learning results into unsupervised learning methods.
SBMLforge is a tool that enables the user to convert and merge KEGG metabolic and signaling pathways (KGML format) to create a single SBML pathway model.
This desktop application provides graphical control of K8055, a USB Experiment Interface Board by Velleman (http://www.velleman.eu/). It will be mostly platform-independend at a later time. The current (beta) version is for windows 2000/XP/Vista/7 on 32Bit. It is incompatible with all other Operating Systems and with 64Bit architecture.
I stopped developing this application. Feel free to reuse the code or contact me on Questions.
Java-based number generator package. Includes several strategies, apart from the usual random: constant, serial, function, composite.
Besides, generators can be wrapped in different filters to obtain modified data series.
The Neurpheus Morphological Analyser performs morphological analysis, stemming or word form generation tasks using sophisticated classification methods for an analysis of words unseen in a training dictionary.
DEPRECATED PROJECT! SolexaTools is becoming the SeqWare project (http://seqware.sourceforge.net) to better reflect its expanded sequencer support. Please go to this project page for code and documentation.
T3D2 - Terrain Track Thermal Data Displayer. Takes 3D GPS tracks and displays the flights over 3D Digital Elevation Data along with pixel data mapped over the terrain. Analyzes the flight for thermals. Checks if a pilot flew optimal.
EasyGIS simplifies GIS data management, sharing, and publishing. REST interfaces (json, html views). Lucene based FTS searches. Thematic maps, business cartography. Integration with external GIS data providers - Google, OSM.
JAMBLAST: Java Application Manager for the ncbi BLAST results. It is a graphic application that allow the user to display, filter, sort, import/export, store/manage BLAST results produced with the NOBLAST (https://sourceforge.net/projects/noblast).