Search Results for "open-shell" - Page 28
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Showing 4550 open source projects for "open-shell"
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FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ
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The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org
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GeneticAlgorithms
Framework for using the Genetic Algorithms optimization heuristic.
GeneticAlgorithms is a simple and lightweight framework to implement an optimization heuristic following the Genetic Algorithms model. A genetic algorithm mimics the natural processes of evolution, selection and "survival of the fittest". This framework is intuitive and good integrated with Java 1.5 SDK and later. -
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Identifiers.org is a system providing resolvable and persistent identifiers, in the form of URIs, used to identify data for the scientific community, with a current focus on the Life Sciences domain. The provision of resolvable identifiers (URLs) fits well with the Semantic Web vision, and the Linked Data initiative. The resolving services of Identifiers.org rely on the information stored in the MIRIAM Registry.
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jBPM
open-source, flexible Business Process Management (BPM) in Java
jBPM is a business process management system. The light-weight, embeddable engine can execute native BPMN2. jBPM offers eclipse-based and web-based tooling for developers and business users to create, monitor and manage your processes. -
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FPF_predict
Fine Particle Fraction (FPF) predictor
Application implements models described by classical mathematical equation for in vitro deposition prediction based on characteristics of formulation and assay conditions. This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012. Published article: https://www.dovepress.com/empirical-modeling-of-the-fine-particle-fraction-fornbspcarrier-based--peer-reviewed-fulltext-article-IJN -
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Zettelkasten 3
Elektronischer Zettelkasten nach Niklas Luhmann
Auf diesen Seiten finden Sie einen elektronischen Zettelkasten für Ihren Computer, der sich am Arbeitsprinzip des Zettelkastens von Niklas Luhmann orientiert. Mit Hilfe dieses Programms können Sie die tägliche Arbeit mit (wissenschaftlichen) Texten erleichtern und wesentlich effektiver gestalten. Sowohl das Verwalten wichtiger Textstellen, Exzerpte und Zitate als auch die anschließende Verwendung dieser Textsammlung zwecks Textproduktion werden durch den Zettelkasten erheblich vereinfacht. -
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Pipes is a desktop system which analyzes an AutoCad(TM) drawing of a sprinkler system, checks for flaws and after these are eliminated, adds the size/diameter labels to the drawing. Tutorial: http://users.norwoodlight.com/janh/wink/autopipes-entry.htm
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Position Data Processing
Processing of GPS travel diaries
A tool developed in Java for the automatic processing of GPS tracks to reconstruct travel diaries. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Program jobman (Job Manager) glues executables written in different languages according to a given flow. The program can run executables with arguments in parallel (multiprocessed) or in loop or in any combination of them.
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KneeTex is an open–source, stand–alone application for information extraction from narrative reports that describe an MRI scan of the knee. Given an MRI report as input, the system outputs the corresponding clinical findings in the form of JavaScript Object Notation objects. The extracted information is mapped onto TRAK, an ontology that formally models knowledge relevant for the rehabilitation of knee conditions.
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SECD
Simulador Educacional de Circuitos Digitales
Educational Digital Circuits Simulator . It tries to be simple for an educational environment. Simulador Educacional de Circuitos Digitales. Intenta tener un uso muy sencillo para ser usado en entornos educacionales. -
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VarScan
Variant detection in next-generation sequencing data
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes. THE LATEST VERSION IS AVAILABLE ON GITHUB -
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The MCISB Project contains software solutions developed in the Manchester Centre for Integrative Systems Biology, University of Manchester.
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Logic Calculator
A Calculator to perform logical operations
The Logic Calculator is an application useful to perform logical operations. It has three modes: (1) Evaluation of logic formulae: In this mode we have the basic boolean operations (negation, conjunction, disjunction, conditional and biconditional) so the user can insert the logic formula and the Logic Calculator displays the truth table along with the models of the formula. (2) Logical entailment: In this mode the user can insert a number of premises followed by a number of... -
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A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.
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oasis-genomics
Oasis Genomics cancer omics integration portal
OASIS is an application that enables complex analytical queries across somatic mutations; copy number changes (CNV); and gene expression data. OASIS has been built on top of the BIoMart frameworks and has been extended to incorporate unique tools and visualizations to facilitate analysis of complex cancer "Omics" datasets. -
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S2O
Converting IBM SPSS files to CDISC ODM
This tool can be used to convert data collections based on IBM SPSS Statistics to the data standard for definition and exchange of clinical trials: CDISC ODM (Operational Data Model). Possible use-cases: - A project is running out of funding and scientific data collection should be performed in free available/open-source data capture systems - Advantages of reliable EDC systems like: Data security (role/right management), backup infrastructure, support of the entire clinical trial lifecycle, traceability of data (who has when entered what data or changed to what value with what reason) and compliant to regulatory requirements. - Pre- / Pilot-Studies based on spreadsheets should now be enhanced towards multi-site/multi-user data collection. ... -
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jAgg
jAgg - Java Aggregation Operations
jAgg is a Java 5.0 API that supports “group by” operations on Lists of Java objects: aggregate operations such as count, sum, max, min, avg, and many more. It supports Super Aggregation: Rollups, Cube, and Grouping Sets. It supports analytic operations such as lag/lead and row number and more. It also allows custom aggregate and analytic operations. -
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Arduino Simulator is a software developed to create simulation for Arduino micro-controller. The interface of the main window is straightforward and intuitive, as it is divided into two tabs called Code and Wiring, each with its specific functionality. Arduino Simulator features touch sensor, LED blinking, 4x4 Keypad, One Digit Seven Segment Display, Serial Monitor to display the output of the code, Wiring to show how to make wiring, Hardware requirements that list the components of the...
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Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors.
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JConvert is a free unit conversion program that has a friendly user interface and can also be used with external applications. Conversions can be modified and/or added easily. Supports multiple languages. Downloads and runs in seconds! Try it now.
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This is a parser in Java for Lisp S-expressions. An S-expression or sexp (for symbolic expression) is a convention for representing data using parentheses.
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Toolkit for processing genetic data. Currently supports (command-line): Half-IBD (Identity by descent) aka HIRs - between 2 or any number of files (in distances and cM); RAW2PED, PED2RAW conversions; regions of homozygousity and other converters.
