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deegree is a Java framework for geospatial software based on the specifications of the OpenGIS Consortium and the ISO. The focus is based on the realisation of OGC specified web services. It is developed in cooperation between lat/lon and the University of Bonn.
The Flow Cytometry Laboratory Information Management System (FlowLIMS) is a web-based software system that gives users the ability to create and manage experiment protocols for the DiVa and FACScan flow cytometers
Modyna is an opensourceapplication to model dynamic systems and simulate their behaviour. Modyna lets you define a system visually. It automatically builds the equations to simulate the systems behaviour. Simulation results are shown as graphs.
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The GeoCacher application for Geo caching enthousiasts and is used in conjunction with a SymbianOS or Android based phone and a location provider. It contains basic navigation as well as map-based navigation based on open street map data.
The NA_WorkSheet is a set of algorithms coded in Java that implements various Numerical Analysis techniques. The tool may be used for graphing, root finding, differentiation, integration, interpolation, linear systems solving, and matrix operations.
The goal of this project is to make a biologic pathway simulation / emulation application. The ultimate goal is to feed different file types to the application and configure a pathway and its behaviour.
NumberMonkey is a calculator written in Java, including basic operations and additional functions; new functions are added with each release. It can be implemented as a standalone desktop application or as an applet within a webpage.
Scan, the Semantic Content ANnotator, is a semantic pipeline that helps connecting information extraction tools to semantic database. UIMA-based, it allows easy plugin-writing: information extraction, ontology control, store in RDF Repositories.
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Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
SeEvolution is the first application that lets you see the effects of mutation events on 3D models of chromosomes. It takes you on a journey through time, showing you the changes that are necessary to go from the genome of an organism to another.
Genome Data Visualization Toolkit (GDVTK) is a Java library for building bioinformatics visualization application. See Bioinformatics, 2004 Mar 22;20(5):727-34. Java-based application framework for visualization of gene regulatory region annotations.
A platform which hosts battles between Fruit War robots - special java programs. The platform accepts source code as robot, and ranks all robots according to battle result. This project has been totally refined and is now hosted at http://robotypo.appspot.com
Automatous Monk is a Java application that maps cellular automaton evolutions into music. The resulting music is represented as jMusic scores that can be played and saved as MIDI files. A real-time version, which uses JSyn, is also available.
gSky Digest is a system tray desktop application that presents astronomy events calculated for your home location. Currently it comes with detailed information about the Sun, the Moon and 7 planets. See Project Web Site for more details.
The GIS Metadata Manager is a simple Java-based desktop application to manage files from geographic information systems (GIS) in a specified directory by grouping files into records, adding metadata and searching the metadata to find files.
This project provides bookmarklet-based web page overlays based on recognized terms from vocabulary servers. These overlays can be used to assist users with unfamiliar terminology or can be used for annotation of web-based data and literature.
ChainBuilder ESB is Java Business Integration (JBI) compliant open source solution for use in Service Oriented Architecture (SOA) environments. ChainBuilder ESB's graphical integration enables new and older applications to easily enter into SOA.
EAIFramework (Enterprise Application Integration Framework) is a simple, scalable and flexible Message Oriented Middleware (MOM), that provides message routing, filtering and transformation capabilities. It is highly customizable through Spring.
Spatial Knowledge Base is a web based application for storing and searching of archaeological sites information. The software was written to improve access to cultural heritage information though the use of digital archiving, search technology, and GIS.
Data and animal management software for large-scale phenotype screening Used by GNF for mouse ENU mutagenesis project. Data visualization & analysis, animal husbandry management, & automated QTL mapping. Usable as stand alone animal husbandry system.
SCAMPI is designed to rapidly detect molecular markers in silico through sequence comparison. For this purpose it creates a unique workflow integrating third party tools like NCBI Blast or Primer3.
A Java-based tool for creating, designing and distributing graphical trees that represent syntactic construction of sentences. Useful for drawing trees under X-bar generative theory or any other correlated application.
A simple Java application for the analysis and identification of gene networks. ProPesca takes as input shorts temporal series of realtime-PCR expression levels and it clusters genes that exhibit either similar or specular behaviors.
SimpleGrapher is a graphing application for students. It is designed to be as simple as possible to use as well as attractive enough to use in college-level papers/projects for math or science courses.