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VELMA stands for Visualization & Exploration of Large Multiple sequence Alignments. VELMA is a Java tool for visualizing alignments of large numbers of biological sequences that exceed the capabilities of existing software.
Clinical study tracker tracks case study members through activities.
Developed at Medical Research Council UK to meet a common clinical trial need to track various types of clinical data. Users log dates of completed tasks against participant ID. Simple, useable, reduces lost data! Makes graphical progress reports.
Geom4J is a computational geometry library for Java. It contains implementation of the most important computational geometry data structures and algorithms coded in pure Java, designed for ease of use and optimized for performance.
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HephaisTK is a toolkit for rapid prototyping of multimodal interfaces. HephaisTK uses SMUIML, a simple markup language for describing human machine multimodal interaction scenarios and integration mechanisms.
Context-awareness is a key concept in ubiquitous computing. The Java Context-Awareness Framework (JCAF) is a Java-based context-awareness infrastructure and programming API for creating context-aware applications.
A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.
This is an independent fork of the ensj-core Ensembl Java API. This version of the API does not receive support from Ensembl. The project is still available under the original LGPL license.
Its an Eclipse 3.5 Plugin.
It can be used to find linear paths for unit testing of any method.
The linear path covers all the child methods and till leaf level of the hierarchy.
The packages which should be covered in the path can be controlled.
Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
This is a network simulator. This is meant to be user friendly as well as feature rich. This field lacks software with good user interface. Even the commercial softwares in this field is quite lame. This aimed to go along Multisim(R) and Blender(R) form
Daniel Farinha's personal open source repository. This is the place for Dan's sandbox, small utilities, libraries, and other personal projects at incubation stage.
Development stop on the standalone application, ported as an autopsy module now: http://www.4ensics.co.uk/smutdetect4autopsy/
SmutDetect is a skin-tone image mining software which scans directories for images containing a specified percentage of skin-tones. It ranks (and filters) these images in various reports. Hash-export can be used to process the results in TSK/autopsy.
A framework and runtime environment for exploring agent-based models designed to support the definition of models using an expressive, high-level and extensible Java API and to support the exploration of these models in both interactive and batch mod
Android Auto Tester utilizes Android's monkey runner and hierarchy viewer to automatically traverses the hierarchy of an Android application's GUI and simulates user inputs from the host side, without accessing the application's source code.
ECL is a system-level specification language for HW/SW designs and is based on Esterel and C.
The ECL compiler parses ECL, writes Esterel and C, and uses the Esterel compiler to produce an implementation.
Originally developed at Cadence Berkeley Labs.
Stylus/Handwriting Input Panel. This is a user-configurable, gesture-aware keyboard/handwriting input panel for text entry on Linux (and other) tablet computers using the X11 system. Needs Ink2Text (<=best) or MSInkServer project for recognition.
The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
The project includes a software, which uses an AI for autonomous sailing of a small sailing boat, equipped with various sensors and GPS. There are various methods for evaluation and improvement of sensor data, route planning, collision avoidance.
Enjekt! is a unique Java/C based fuel injection system for aircooled Volkswagens. Enjekt! uses software models to control fuel injection instead of relying static look up tables.
ORE (Ontology Rule Editor) is a platform-independent application to manage
the use of inference rules defined on a model represented by an ontology. ORE offers a easy, well-guided and intiutive GUI to define and test these inference rules.
Framework SRM (Sound Recognizer ME) written in Java Micro Edition capable of recognize abstract sounds and isolated words announcer dependent on mobile devices.