Search Results for "java" - Page 23
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Showing 5041 open source projects for "java"
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Java bio-informatics library to analyze and convert genomic sequence and assembly data. This library was created and used by the J. Craig Venter Institute (JCVI)
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jalicanto
Traveling Salesman Problem "window time based" aproximate solver
Time based Traveling salesman problem solver. Using iterated local search algorithm, implements xkick perturbation Programmed in Java. A class to use the TSP Suite(Thomas Weise, Raymond Chiong, J ¨org L¨assig, Ke Tang, Shigeyoshi Tsutsui, Wenxiang Chen, Zbigniew Michalewicz, Xin Yao, Benchmarking Optimization Algorithms: An Open Source Framework for the Traveling Salesman Problem. 2014.),is implemented. -
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spectralHMM
A spectral method for inferring selection from time series data
***WARNING*** This software was migrated to: https://github.com/popgenmethods/spectralHMM Support and updates will only be available at this new address. This software implements the algorithms described in the following paper: Steinrücken, M., Bhaskar, A. and Song, Y.S. A novel spectral method for inferring general diploid selection from time series genetic data. Annals of Applied Statistics, Vol. 8, No. 4 (2014) 2203-2222 -
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MYRA
A collection of ACO algorithms for the data mining classification task
...It includes popular rule induction and decision tree induction algorithms. The algorithms are ready to be used from the command line or can be easily called from your own Java code. They are build using a modular architecture, so they can be easily extended to incorporate different procedures and/or use different parameter values. This project is now hosted at: https://github.com/febo/myra -
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SWire
A Stata plugin for connecting Stata with other software
SWire is a software interface enabling us to query Stata for the executing of basic operations like reading or writing data. The core of SWire is a Java plugin which functions as a server and it can be queried by using the HTTP protocol. SWire is in essence a wrapper around the Stata-Java API and all the functions relating to this API can, therefore, be externally called by clients. SWire can be interrogated on a local network and it accepts AJAX queries, thus enabling the development of web applications which provide the user with graphical user interfaces. ... -
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NOTE: Use of this codebase is NOT RECOMMENDED. This project has been migrated to github at http://jaerproject.net (or https://github.com/SensorsINI/jaer for the Java code). Commits have been disabled for the subversion sourceforge repository and new development is being done on the github repository. Java tools for Address-Event Representation (AER) neuromorphic processing. Uses USB hardware. See wiki at https://sourceforge.net/p/jaer/wiki/
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MSqBAT
Label-free protein quantification for LC-MS
...It’s main features are 1) Label-free, MS1-based quantification 2) Support both LC-MALDI-MS- as well as LC-ESI-MS data 3) Supports both GeLC-MALDI-MS- and GeLC-ESI-MS data 4) Convenient, graphical user interface Acknowledgements The development of MSqBAT is kindly supported by YourKit Java Profiler. -
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Java Information Retrieval System (JIRS) is an information retrieval system based on passages. This system has the advantage of being able to change to the different modules from the system and their functionality modifying the configuration XML file
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Maui
Maui is the Maltcms User Interface
Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas. -
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MorseClusterSolver
The program is designed to search for clusters global minimum structur
The program is designed to search for clusters global minimum structures of Morse clusters. -
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Pyramid Calc
Simple calculator
Simple and fast in use scientific calculator. More details in README. It's not that long. -
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...The WNLT project delivers four core NLP modules; a) Word Segmentation for separating text into words b) Sentence Boundary Disambiguation for finding sentence boundaries c) Part of Speech Tagger for determining the part of speech of each word d) Morphological Analyser for identifying the root form (lemma) of words. The modules are written in JAVA and ‘wrapped’ for execution under the General Architecture for Text Engineering (GATE) framework. The project also includes CYMRIE an adapted version for Welsh of the GATE - ANNIE Named Entity Recognition (NER) application for a range of entities such as Persons, Organisations, Locations, and date and time expressions. Version 2.x The CYMRIE pipeline is accessible via a API, standalone GUI and CLI. ...
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CalclipseMath
Java math expression parser and script interpreter
CalclipseMath – CalM for short – is a math parser written in Java. With a few lines of code CalM enables your application to evaluate user-supplied mathematical expressions, such as "e^(sin .25pi)" and "(sqrt e)^(sqrt 2)". The standard configuration of the parser has a wide variety of mathematical operations, ranging from basic arithmetic, trigonometry, combinatorics, linear algebra and more. -
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CalcoloCombinatorio-Java
Un semplice programma in Java per il calcolo combinatorio
Un piccolo tool in java per effettuare calcoli combinatori come: -Disposizioni -Permutazioni -Combinazioni Calcolo Combinatorio Java -
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RDRPOSTagger
A Rule-based Part-of-Speech and Morphological Tagging Toolkit
RDRPOSTagger is a robust, easy-to-use and language-independent rule-based toolkit for Part-of-Speech (POS) and morphological tagging. RDRPOSTagger obtains fast performance in both learning and tagging process. RDRPOSTagger also achieves a very competitive accuracy in comparison to the state-of-the-art results. RDRPOSTagger now supports pre-trained POS and morphological tagging models for Bulgarian, Czech, Dutch, English, French, German, Hindi, Italian, Portuguese, Spanish, Swedish, Thai... -
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Elexis Praxisprogramm
An Eclipse RCP program for all aspects of a (Swiss) medical practice
An Eclipse RCP program for all aspects of a medical practice: electronic medical record (EMR), laboratory findings etc., as well as accounting, billing (swiss TARMED-System, other systems to be developped) and other daily work. A fully functional version may be downloaded via http://download.elexis.info/3.1.0. Users may optionally include a demo database to have a playground for experiments. See also http://wiki.elexis.info/Installation_Elexis_3.0_OpenSource Elexis 3.1.0 was released... -
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Analog Insydes is a Mathematica toolbox for symbolic analysis of analog electronic circuits. This project provides a set of free add-ons to Analog Insydes, including a Java front-end and a native netlister for Cadence's Analog Design Environment (ADE).
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VeriSiMPL
Verification via biSimulations of Max-Plus-Linear models
...The generated LTS is exported to the NuSMV language. As such, it can be fed, along with a specification of interest, to the NuSMV model checker. If you are more familiar with JAVA language, we suggest you to try VeriSiMPL version 2.0 which is fully based on JAVA. If you are more familiar with MATLAB language, we suggest you to try VeriSiMPL version 1.4 which is fully based on MATLAB. -
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CSV Comparator
CSV Comparator is a tool for comparing files which contain CSV-Data.
CSV Comparator is a tool for comparing files which contain CSV-Data. It was created for performance engineers to be able to have a easy way to compare data from two testruns and be able to automate the comparing process of various files with scripts. There is a command line tool as well as a user interface. In case you need to compare .xml-Files you can convert them to .csv-Files with my other project CSV Transformer. The advantages by using CSV as input and output are the... -
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DORY
For mining KASH proteins (SUN domain-interacting proteins)
DORY is a java program developed for searching KASH protein in large protein databases (in FASTA format). DORY is upgraded to DORY2. DORY2 required BLAST+ to run. ***Please make sure BLAST+ is installed on your computer.*** Please see the following publication for detail: Zhou X, Graumann K, Wirthmueller L, Jones JDG, Meier I (2014) Identification of unique SUN-interacting nuclear envelope proteins with diverse functions in plants. -
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bel_fft
FFT co-processor in Verilog based on the KISS FFT
...So far AMBA AXI, Altera's Avalon bus and the Wishbone bus are supported. However, bel_fft's architecture allows an easy adaptation to further bus architectures (e.g. AMBA AHB). It comes with a Java wizard to configure the co-processor and to generate all required files (e.g. twiddle ROMs). It comes with integration into Xilinx Vivado, EDK, and Altera QSYS and includes example designs for Xilinx Zynq and with PCI-Express core (including Linux driver and application). bel_fft is distributed under the GNU Lesser Public License 2.1. -
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MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the helix coil transition and then the melting temperature. Four types of hybridization are possible : DNA/DNA, RNA/RNA, RNA/DNA and mRNA/RNA.
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Adele
Adhoc Data Exploration - Live & Easy
Adele was developed to simplify the daily work with data. Use it as a swiss knife to fill the gap between your work with spreadsheet application like MS Excel and enterprise servers like SAP ERP. Specialized tools like Rapid Miner, KNIME or similiary stuff should not be replaced. But Adele is designed for business people working with spreadsheet applications to analyse their data. There are many technical concepts in an easier way included. For example realtime OLAP, transformations,... -
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Lattice Miner is a data mining prototype for creating, visualizing and exploring concept (Galois) lattices. It allows the generation of formal concepts and association rules.
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Simple-Scrape is a simple web-scraping library that allows for programmatic access to HTML code. No further techniques are needed and the library is very compact and thus easy to use.
