Search Results for "ps-scripts" - Page 2

...These allow for mutation of short 2-15 amino acid peptides, and associated screening of these using AutoDock or AutoDock Vina, allowing for 8 CPU systems to screen 10K peptides a day or 1-2K with flexible residues added in. A detailed method for determining the peptide ligand for any sequenced and modeled T cell receptor will be published and link added at some point. These scripts are written quickly in a couple weeks to meet a task and could be re-written more eloquently. I may or may not work on this project again, the goal would be to introduce amino acids into any protein in openCL to allow automated design on GPU's.Limits-The standard PDB codes used slightly modified, proline not at angles, peptide shld be linear,

Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module.

Nomin is a mapping engine for the Java platform. It provides abilities to transform object trees using declarative mapping rules. Main features are no XML configuration, intuitively looking mapping, using arbitrary expressions/method invocations.

This is a pipeline that is used to store an EST or Genome assembly information including reads and their alignment in a mysql database. Further more, it provides a set of scripts to mine SNPs and other statistics from the assembly.

The TPAC Digital Library is a web-based application that publishes large catalogs of scientific data.

Java version of Stellarium.

E-BioFlow enables the scientists to design workflow using three different perspectives: control flow, data flow and resource perspective. The workflow tool is based on the Yawl engine and has support for BioMOBY and WSDL services and Perl and R scripts.

http://ewi.utwente.nl/~biorange/rshell - The RShell project is a plugin for the Taverna workflow system. It enables one to execute R scripts within the Taverna workflow system. The RShell processor is built on the RServe project. For more info:

...Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts

OpenBeanPie intends to implement an integration with BeanShell Java Interpreter and a little abstraction/simplification layer over WiiRemoteJ in order to obtain an interpreter for scripts that control Nintendo's Wiimotes behaviour.

Trauma registry suite; Data collection application and server scripts to build trauma data warehouse and perform web-based analysis reporting. Cross-platform compatible for Windows, Apple, Unix, or Linux.

M+ Compiler/Interpreter is a interpreter library written in Java that delivers the possibility to extend any Java application with simple scripts. Besides the usage of native datatypes and operations you can instantiate and call native Java objects.

This site is intended as a location containing a suite of tools to (1) Aid in the design of db APIs to be utilized in a J2EE environment and (2) generate stubs for the db API, Java classes and SQL DDL necessary to support the MVC pattern and the Data Own

FlameCalc is an RPN caclulator by the good folks at the Flame Design Group. It is written in Java with the intent to remain GCJ compatible and eventually evolve into a useful RPN language. HTTP-loaded scripts and Java plugins are supported.

GNU Autoconf, Automake and Libtool scripts and makefiles for the Open CASCADE solid modeler. http://www.opencascade.org

Paper2bibtex is a modular information harvester implemented in Java which extracts name and author information from scientific papers (PS or PDF), adds paper meta information from public internet sites and compiles a bibliography entry for bibtex

CodeBot is a java (swing) based application that allows to generate keyboard and mouse events, by using simple scripting configuration. Bot allows to start and manage scripts in new threads. Can be used to write game bots or mouse/keyb simulations.