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Example-based Modeling (EMO) is an tool to create data models, with examples, using a web interface. You interactively create a web-accessible database of models and samples for those models. A white paper describes the underlying assumptions.
The purpose of this project is to develop ontology-based tools for the study of animal behavior (ethology). The goal is not to produce a general ontology or editor, but comparative methods
and (behavior) data entry tools (ethontos and owlwatcher).
Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments.
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OpenDMAP (Open Source Direct Memory Access Parser) is a natural language processing (text mining) application: a semantic parser for information extraction.
AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general.
AnnaF was build upon the pipeline framework Anna.
Mirth Connect is an open source cross-platform HL7 interface engine that enables bi-directional sending of HL7 messages between systems and applications over multiple transports.
UIMA solution for analysing web-server logs, that does things like analyze the user behavioral patterns in the channels followed by users from the log files, report current and the past behaviour of the visitors in selfservice systems.
AppSignal's MCP server hands Claude, Cursor, or Zed your real errors, traces, and the deploy that shipped them. AI writes the fix; you review the diff.
PROSE is a system that performs controlled, systematic, and efficient modification of the code of running Java applications without requiring them to be shut down. PROSE is an infrastructure that supports software adaptation by extending apps at runtime.
Protege is a free, open-source platform that provides a suite of tools to construct domain models and knowledge-based applications with frame-based and Semantic Web ontologies.
JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts
A Trial Workbench for Facilitating Best Practices from Prospective to Acute Care in Respiratory Medicine. We aim to provide a set of information management toolboxes that facilitates decision support applications in medical information systems.
Frida is image analysis software. Frida was developed by the Johns Hopkins University Tissue Microarray Core Facility. It is open source and written in 100% Java. Frida makes use of functionality from the NIH's ImageJ application. Note: Frida was integr
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.
Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs.
A visual interface for leJOS. RCXDownload automatically sets the JDK-, leJOS- and ClassPaths, compiles the chosen Java-Source, shows the compiler messages and is able to link and load both, the compiled classes and the leJOS-firmware. RCXDirectMode direc
Software Development Toolkit and Libraries to support the adoption of MIMOSA and Open O&M Initiatives. The libraries and toolkits will focus on basic implementation of DAO, XML, and Web Service tools.
Viperfish is intended for the sailor looking to improve his weather forecasting. Viperfish provides the ability to visualise and modify GRIB (weather prediction) files, it can plot routes and provides routing based on coming weather and boat performance.
StatGen uses information from a genetic distance matrix or a newick tree to summarize the sequence variation within or between groups of sequences with summary statistics and produce graphical reports of those statistics.
Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program.
It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user
written MAEPlugins, documentation, tutorials, demo data.
A dialect of XUL implementing most of Mozilla XUL's Fourth Draft. XML User Interface Language (XUL) is a method for easily creating GUI applications. Lux XUL supports Python scripting via Jython 2.1.