Search Results for "method" - Page 2
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Showing 87 open source projects for "method"
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Agent.GUI
The Project moved to github https://github.com/EnFlexIT/AgentWorkbench
The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users. -
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cmotif
A method for mining conditional phosphorylation motifs
Phosphorylation motifs represent position-specific amino acid patterns around the phosphorylation sites in the set of phosphopeptides. The discovery of phosphorylation motifs is a very valuable work in bioinformatics. Although several algorithms have been proposed to uncover phosphorylation motifs, the problem of efficiently discovering a set of significant motifs with sufficiently high coverage and non-redundancy still remains unsolved. In this paper, we propose an algorithm called C-Motif... -
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sdfduhamel
Solving single degree of freedom dynamic vibration by duhamel integral
Solving single degree of freedom dynamic vibration by duhamel integral, using numeric integration method. -
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jk3d is a java code for 3d interpolation of scattered data. jk3d uses a quality weighted ordinary Kriging method and optional an inverse distances weighting method. It has no graphical user interface and uses ASCII files to define the input.
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Data Matrix
Java Api to manipulate simple on data of Matrix Type
Java Api to manipulate simple on data of Matrix Type. There is lot of usefull methods like resize, insert , remove, sort and lot of other methods. Usefull methods to manipulate with diagonals. For example you can create block diagonal matrix. There is lot of usefull methods to manipulate on mathematic matrix also, like determinant , norm , minor , cofactor , solveLienarSystem , arithmetic operations also and lot more. -
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Unsupervised TXT classifier
Classify any two TXT documents, no training required - JAVA
...This extracts a relevant structure for both documents (and thus avoids the over-training) which are then compared using the Vector-Space analysis to give a range of belonging of one document to another (and thus avoids the shortage of information). This method can be used to create the user-defined classes by merging texts of certain categories and then to calculate the relevant distances between the documents, but this is not necessary. -
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Face Recognition Based Login Assistant
Login to Websites Automatically Using Your Face as Password
...This feature can be used for tracking prisoners, attendance and signing in to user accounts. The Viola - Jones Algorithm presents a novel face detection technique, we would implement this technique for face detection and then use eigen faces method to recognize the person in the image. Once recognized the person can easily sign in to any applications without the need of typing passwords or usernames. -
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qcasoft
Qualitative Comparative Analysis with Fuzzy Data in JAVA
This software allows qualitative comparative analysis with fuzzy data. The program is based on the work of C.C. Ragin. For more information, see the following articles: * Ragin, C. C., 1987, The Comparative Method. Moving beyond qualitative and quantitative strategies, Berkeley/Los Angeles/London: Univ. of California Press. * Ragin, C. C., 2000, Fuzzy-Set Social Science, Chicago/London: University of Chicago Press. * Ragin, C. C., 2000, Redesigning Social Inquiry: Fuzzy Sets and Beyond, Chicago/London: University of Chicago Press. -
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Autmated Peptide Screening
Screening peptides for MHC and/or MHC-T cell receptor affinity
...These allow for mutation of short 2-15 amino acid peptides, and associated screening of these using AutoDock or AutoDock Vina, allowing for 8 CPU systems to screen 10K peptides a day or 1-2K with flexible residues added in. A detailed method for determining the peptide ligand for any sequenced and modeled T cell receptor will be published and link added at some point. These scripts are written quickly in a couple weeks to meet a task and could be re-written more eloquently. I may or may not work on this project again, the goal would be to introduce amino acids into any protein in openCL to allow automated design on GPU's.Limits-The standard PDB codes used slightly modified, proline not at angles, peptide shld be linear, -
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AdPreqFr4SL
Adaptive Prequential Learning Framework
...Since updating the structure is a costly task, we use new data to primarily adapt the parameters and only if this is really necessary, do we adapt the structure. The method for handling concept drift is based on the Shewhart P-Chart. Project homepage: http://adpreqfr4sl.sourceforge.net -
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...We aim that this software can be used for collecting biological data and making biological models to simulate it by biological researchers. ezBioNet can build a detailed biological model including signal transduction, enzyme kinetics, expression network, etc. It also support number of numerical analysis method to simulate the biological reaction networks.
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The Open Decision Makes enables you to find the best alternative for a defined goal with the AHP (Analytic Hierarchy Process) method.
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mPSQed
Alignment editor and multiplex pyrosequencing assay designer
...The design of appropriate PCR-based assays is a complex task, especially when conserved discriminating polymorphisms are rare or if the number of types which need to be differentiated is high. One extremely useful but underused method for this purpose is the multiplex pyrosequencing technique. mPSQed is a program developed at the Robert Koch Institute and targeted at facilitating the creation of such assays. -
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SweetOnionCCG2PTBConverter
A tool that converts CCGBank to PTB
...This tool can convert CCG derivations to PTB trees by using Max Entropy models as well as visualizing the tree graphs. The main technical innovation presented here is the effective conversion method which achieves a F score over 95%. -
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...Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the following paper: Ehsan Emadzadeh, Azadeh Nikfarjam, and Graciela Gonzalez. 2011. Double Layered Learning for Biological Event Extraction from Text. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. ...
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...It provides abilities to transform object trees using declarative mapping rules. Main features are no XML configuration, intuitively looking mapping, using arbitrary expressions/method invocations.
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This is MyCalendar object which extends GregorianCalendar object, user can get lunar information by reading related attributes.
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Its an Eclipse 3.5 Plugin. It can be used to find linear paths for unit testing of any method. The linear path covers all the child methods and till leaf level of the hierarchy. The packages which should be covered in the path can be controlled.
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Mark Six Analyst is a database of Hong Kong Lottery or so-called Mark Six. It provides a tool of various statistics method to show relationships between data and forecasts.
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Corra [BMC Bioinformatics 2008] is a computational framework & tools for discovery proteomics using label free LC-MS and ATAQS [BMC Bioinformatics 2011] is a computational framework & tools for validation proteomics using SRM LC-MS method.
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GenoGUARD is a DNA sequence screening software that implements the best match method recommended by the federal government to detect the presence of biosecurity threats in synthetic DNA orders.
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A prototype input method for OCZ's NIA headset allows full text entry. It is based on Morse Code (3 keystrokes generated from the NIA software) and can produce full English text with all ASCII symbols, uppercase and lowercase.
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FastPval is multiple stage p-value computing software that computes empirical p-values from a large set of permutated/resampled background data.
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JTHERGAS (a JAVA implementation of THERGAS) estimates thermodynamic information from two dimensional graphical representations of molecules and radicals based on the Benson additivity method.
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GEM is a computational method for identification of transcription factor modulators, using expression datasets. The method tests if the correlation between factor and target gene depends on the expression of the modulator.
